view Galaxy-Workflow-CAPS_Marker_Design_from_VCF.ga @ 4:be070a68521e draft

Uploaded workflow from vcf file to CAPS

{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "CAPS Marker Design from VCF", 
    "steps": {
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                    "name": "Input Multi fasta Dataset"
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                "top": 225
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            "tool_errors": null, 
            "tool_id": null, 
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            "tool_version": null, 
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        "1": {
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            "id": 1, 
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            "inputs": [
                {
                    "description": "", 
                    "name": "Input VCF  Dataset"
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            ], 
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                "top": 592
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            "tool_errors": null, 
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        "2": {
            "annotation": "", 
            "id": 2, 
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                "inputVcf": {
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                    "output_name": "output"
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            }, 
            "inputs": [], 
            "name": "Convert vcf to gff", 
            "outputs": [
                {
                    "name": "outputfile", 
                    "type": "gff3"
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        "3": {
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                "inputSNPGff3File": {
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            "inputs": [], 
            "name": "CAPS Detection", 
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                {
                    "name": "outputfile", 
                    "type": "interval"
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        "4": {
            "annotation": "get feature ID column", 
            "id": 4, 
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                    "id": 3, 
                    "output_name": "outputfile"
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            "inputs": [], 
            "name": "Cut", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "tabular"
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            "position": {
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            "post_job_actions": {}, 
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            "annotation": "", 
            "id": 5, 
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                "inputfastaFile": {
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            }, 
            "inputs": [
                {
                    "description": "runtime parameter for tool Design primers to features", 
                    "name": "min_size"
                }, 
                {
                    "description": "runtime parameter for tool Design primers to features", 
                    "name": "max_size"
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            ], 
            "name": "Design primers to features", 
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                    "name": "primer_outputfile", 
                    "type": "tabular"
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            "name": "Select", 
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                    "type": "input"
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            "inputs": [], 
            "name": "Unique", 
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                {
                    "name": "outputfile", 
                    "type": "txt"
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