Mercurial > repos > john-mccallum > ssr_marker_design

annotate MISA/design_MISA.sh @ 2:16b5aa275b42 default tip

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Uploaded minor revision to gff converter
author john-mccallum
date Wed, 23 Nov 2011 19:15:31 -0500
parents 3006582bfc76
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3006582bfc76 Uploaded V1.0 MISA tools and helper scripts
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1 #!/bin/sh
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2 #design primer sets from MISA output using Primer 3 and MISA helper scripts
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3 #USAGE sh design_MISA.sh <misa_file> <source_fasta_file> <output_file>
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5 #get directory
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6 SCRIPT=`readlink -f $0`
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7 SCRIPTPATH=`dirname $SCRIPT`
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9 perl $SCRIPTPATH/p3_in.pl $1 $2 temp.p3in
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11 cat temp.p3in | primer3_core > temp.p3out
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14 perl $SCRIPTPATH/p3_out.pl temp.p3out $1 $3
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16 rm -f temp.*
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