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planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy
author johnheap
date Thu, 19 Jul 2018 06:38:58 -0400
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8f6469ffef85 planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy
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1 <html><title>T.congolense VAP</title><body><div style='text-align:center'><h2>Trypanosoma Variant Antigen Profile</h2><h3>test_html<br>Genomic Analysis</h3></p>Relative abundance and the deviation from the mean of the 15 phylotypes within the variant repertoire. <style> table, th, tr, td {border: 1px solid black; border-collapse: collapse;}</style><table style='width:50%;margin-left:25%;text-align:center'><tr><th>Phylotype</th><th>Relative Frequency</th><th>Deviation from Mean</th></tr><tr><td>phy1</td><td>0.1117</td><td>0.0008</td></tr><tr><td>phy2</td><td>0.1036</td><td>0.0073</td></tr><tr><td>phy3</td><td>0.0785</td><td>-0.0012</td></tr><tr><td>phy4</td><td>0.0111</td><td>-0.0045</td></tr><tr><td>phy5</td><td>0.0543</td><td>-0.0137</td></tr><tr><td>phy6</td><td>0.0563</td><td>-0.0162</td></tr><tr><td>phy7</td><td>0.0734</td><td>0.0217</td></tr><tr><td>phy8</td><td>0.0161</td><td>0.0079</td></tr><tr><td>phy9</td><td>0.0111</td><td>-0.0031</td></tr><tr><td>phy10</td><td>0.0282</td><td>-0.0011</td></tr><tr><td>phy11</td><td>0.1268</td><td>-0.0131</td></tr><tr><td>phy12</td><td>0.0584</td><td>0.0037</td></tr><tr><td>phy13</td><td>0.0624</td><td>-0.0094</td></tr><tr><td>phy14</td><td>0.0372</td><td>0.0056</td></tr><tr><td>phy15</td><td>0.1710</td><td>0.0152</td></tr></table><p> <h3>The Variation Heat Map and Dendogram</h3> The absolute phylotype variation in the sample compared to model dataset.</p><img src = 'heatmap.png' alt='Variation Heatmap' style='max-width:100%'><br><br><p><h3>The Deviation Heat Map and Dendogram</h3>The phylotype variation expressed as the deviation from your sample mean compared to the model dataset</p><img src = 'dheatmap.png' alt='Deviation Heatmap' style='max-width:100%'><br><br><p><h3>The Variation PCA plot</h3>PCA analysis corresponding to absolute variation. Colour coded according to location</p><img src = 'vapPCA.png' alt='PCA Analysis' style='max-width:100%'><br><br></div></body></html>