Trypanosoma Variant Antigen Profile
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Genomic Analysis
Relative abundance and the deviation from the mean of the 15 phylotypes within the variant repertoire.
| Phylotype | Relative Frequency | Deviation from Mean |
|---|
| phy1 | 0.1117 | 0.0008 |
| phy2 | 0.1036 | 0.0073 |
| phy3 | 0.0785 | -0.0012 |
| phy4 | 0.0111 | -0.0045 |
| phy5 | 0.0543 | -0.0137 |
| phy6 | 0.0563 | -0.0162 |
| phy7 | 0.0734 | 0.0217 |
| phy8 | 0.0161 | 0.0079 |
| phy9 | 0.0111 | -0.0031 |
| phy10 | 0.0282 | -0.0011 |
| phy11 | 0.1268 | -0.0131 |
| phy12 | 0.0584 | 0.0037 |
| phy13 | 0.0624 | -0.0094 |
| phy14 | 0.0372 | 0.0056 |
| phy15 | 0.1710 | 0.0152 |
The Variation Heat Map and Dendogram
The absolute phylotype variation in the sample compared to model dataset.
The Deviation Heat Map and Dendogram
The phylotype variation expressed as the deviation from your sample mean compared to the model dataset
The Variation PCA plot
PCA analysis corresponding to absolute variation. Colour coded according to location
