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comparison VAP.xml @ 3:4432e4183ebd draft

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planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy
author johnheap
date Wed, 11 Jul 2018 08:58:14 -0400
parents 199e5afe498d
children 6450a72e8f6b
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2:82770f07a036 3:4432e4183ebd
1 <tool id="VAPPER" name="VAPPER" version="1.0.0"> 1 <tool id="VAP" name="VAPPER" version="1.0.0">
2 <description>is a Variant Antigen Profiler that accurately quantifies the variant antigen diversity or presence in a Trypanosoma congolense or T.vivax isolate</description> 2 <description>is a Variant Antigen Profiler that accurately quantifies the variant antigen diversity or presence in a Trypanosoma congolense or T.vivax isolate</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.10">velvet</requirement> 4 <requirement type="package" version="1.2.10">velvet</requirement>
5 <requirement type="package" version="3.1b2">HMMER</requirement> 5 <requirement type="package" version="3.1b2">HMMER</requirement>
6 <requirement type="package" version="2.2.6">bowtie2</requirement> 6 <requirement type="package" version="2.2.6">bowtie2</requirement>
7 <requirement type="package" version="1.6">samtools</requirement> 7 <requirement type="package" version="1.6">samtools</requirement>
8 <requirement type="package" version="2.2.1">cufflinks</requirement> 8 <requirement type="package" version="2.2.1">cufflinks</requirement>
9 <requirement type="package" version="2.7.1">blast</requirement> 9 <requirement type="package" version="2.7.1">blast</requirement>
10 <requirement type="package" version="6.6.0.0">EMBOSS</requirement>
11 <requirement type="package" version="0.8.0">seaborn</requirement>
10 </requirements> 12 </requirements>
11 13
12 14
13 <command interpreter="python" detect_errors="exit_code"> 15 <command interpreter="python" detect_errors="exit_code">
14 #if $TrypType.species == "Trypanosoma congolense": 16 #if $TrypType.species == "Trypanosoma congolense":