Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype13b.hmm @ 10:6450a72e8f6b draft
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| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:11:12 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype14.2 LENG 32 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Jul 28 16:17:39 2015 NSEQ 8 EFFN 2.628906 CKSUM 3760608179 STATS LOCAL MSV -7.4951 0.71981 STATS LOCAL VITERBI -7.6469 0.71981 STATS LOCAL FORWARD -4.1078 0.71981 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.90190 2.45101 2.86412 2.78407 4.22511 1.87795 3.37520 3.67807 2.68716 2.89926 4.42466 3.45809 3.74053 2.98260 3.20135 3.00066 2.95608 3.07760 3.03803 3.33675 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.00000 * 1 4.42099 5.64797 5.71438 5.43713 3.80975 5.19088 5.84037 3.11708 5.23212 0.23184 3.67092 5.65307 5.52016 5.34108 5.22063 5.03151 4.69423 3.37923 5.92241 4.84295 1 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 2 4.10816 0.12302 5.62020 5.60375 5.57106 4.44372 6.08514 5.03998 5.51500 4.81789 5.98886 5.42911 5.18989 5.81486 5.44300 4.37280 4.64432 4.67680 6.63136 5.82318 2 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 3 4.19845 5.78580 5.03570 5.07119 6.02829 0.10236 6.02432 5.95085 5.35807 5.42542 6.47157 5.20404 5.18257 5.61121 5.40357 4.40825 4.73731 5.30712 6.78906 6.18986 3 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 4 3.70660 4.90608 5.77713 5.28875 4.05122 5.29110 5.92736 1.64411 5.21380 1.66616 3.79357 5.44508 5.47859 5.38608 5.33102 4.71284 3.95744 0.75504 6.17425 5.02038 4 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 5 2.94048 5.21200 3.07749 1.73246 4.75551 3.60652 4.07397 4.20598 2.89530 3.76410 4.55657 3.24842 4.13577 3.21669 3.36980 1.37492 1.93670 3.77615 5.94865 4.57724 5 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 6 4.19845 5.78580 5.03570 5.07119 6.02829 0.10236 6.02432 5.95085 5.35807 5.42542 6.47157 5.20404 5.18257 5.61121 5.40357 4.40825 4.73731 5.30712 6.78906 6.18986 6 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 7 2.24217 5.78823 1.66013 1.48103 5.12369 1.95079 4.09746 4.63844 3.01708 4.11244 4.90731 3.11847 4.21293 3.23587 3.58240 3.12753 3.48758 4.18845 6.25722 4.77557 7 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 8 2.97190 5.44592 1.69884 2.60636 4.80301 3.67675 2.38273 4.27141 1.75160 3.73473 4.49597 3.14456 4.08956 2.96515 2.32250 2.92829 3.19768 3.84749 5.84509 4.46578 8 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 9 3.38308 5.09797 4.55433 4.28944 3.45474 4.06019 4.57124 4.16498 4.05608 3.69936 4.75548 4.32992 4.71662 4.43496 4.22099 2.09488 3.81062 3.86032 0.57416 3.43497 9 W - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 10 4.19845 5.78580 5.03570 5.07119 6.02829 0.10236 6.02432 5.95085 5.35807 5.42542 6.47157 5.20404 5.18257 5.61121 5.40357 4.40825 4.73731 5.30712 6.78906 6.18986 10 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 11 4.10816 0.12302 5.62020 5.60375 5.57106 4.44372 6.08514 5.03998 5.51500 4.81789 5.98886 5.42911 5.18989 5.81486 5.44300 4.37280 4.64432 4.67680 6.63136 5.82318 11 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 12 2.84397 5.10938 3.20187 2.64453 4.38056 3.65027 3.84198 3.80575 2.16325 3.37961 2.84581 3.16695 2.83250 2.17408 3.03473 2.85878 1.80044 3.46117 5.59312 4.24971 12 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 13 1.94045 5.03103 3.21663 2.20190 4.28799 3.64970 3.86520 3.68680 2.01510 3.30194 4.11620 3.18816 4.04768 3.01447 3.10857 2.86372 2.47599 2.16573 5.54560 4.21150 13 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 14 2.31157 4.78895 3.52056 2.98989 3.97549 3.75298 4.02810 3.38814 2.27345 3.06586 3.93848 3.43549 4.17339 3.27250 3.24157 3.02093 2.36999 3.12449 5.35389 1.45115 14 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 15 1.98357 5.31954 3.08607 2.13791 4.66167 3.60619 3.78707 4.13678 2.13640 3.61843 4.36427 3.07754 4.00030 2.33177 2.39518 2.10926 3.06752 3.70932 5.74968 4.35279 15 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 16 1.48886 4.77400 3.54354 2.98722 4.03859 3.72344 4.03647 2.48258 2.87792 3.07678 3.94800 3.43013 2.75474 3.26474 2.05755 2.98504 3.11004 3.11386 5.40387 4.13978 16 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 17 3.02183 5.37999 2.96369 2.66606 4.85510 1.77527 4.04941 4.32986 2.85836 3.84929 4.63764 2.34889 1.71917 2.30102 3.33628 3.00416 3.30593 3.89599 6.00851 4.61343 17 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 18 2.33370 5.22929 2.17684 2.58493 4.57651 3.60427 2.73492 4.03415 2.64262 3.56840 4.34153 3.12189 4.03427 2.98545 3.12975 2.32430 1.71341 3.63658 5.74545 4.36163 18 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 19 2.83342 4.93374 3.28965 2.76240 4.16649 2.12723 2.06509 3.60586 2.75904 3.23377 4.06630 3.25959 4.08022 3.10617 3.20292 2.30992 2.45862 3.29677 5.48098 2.84177 19 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 20 4.60046 5.77668 5.05844 4.87233 2.48417 5.07091 1.65873 4.50108 4.62682 3.68669 5.00559 4.65038 5.40775 4.73192 4.68258 4.51900 4.81835 4.40508 4.15569 0.57772 20 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 21 1.87157 4.47244 4.89978 4.32062 2.53974 4.30332 4.67568 2.43779 4.16379 1.88708 3.48977 4.41295 4.64951 4.32964 4.25131 3.62627 3.34047 1.22983 5.18868 4.00388 21 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 22 4.19845 5.78580 5.03570 5.07119 6.02829 0.10236 6.02432 5.95085 5.35807 5.42542 6.47157 5.20404 5.18257 5.61121 5.40357 4.40825 4.73731 5.30712 6.78906 6.18986 22 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 23 3.28824 5.86845 1.37287 1.58229 5.18664 3.66946 4.14593 4.69917 3.09873 4.18130 4.99310 3.12969 4.24998 3.29280 3.67639 3.18788 1.64925 4.25558 6.33276 4.83936 23 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 24 3.02475 5.38798 3.10639 2.69147 4.78982 1.36690 3.95526 4.23889 2.12517 3.74183 4.53050 3.21701 2.62474 2.29920 3.03789 3.00308 3.27094 3.83539 5.88199 4.52514 24 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 25 3.58660 5.76752 4.03927 3.26983 5.32676 4.17589 4.01798 4.62902 1.43612 3.97589 4.83316 3.65830 4.50826 1.10132 1.86870 3.54788 3.71894 4.28909 5.94928 4.81706 25 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 26 3.16997 5.44796 3.16920 2.80844 4.66112 3.78862 1.19349 4.26245 2.68143 3.77001 4.60068 3.32033 2.58780 2.03506 3.03873 3.15374 3.41250 3.89481 5.82982 4.45433 26 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 27 5.23319 6.19006 5.69763 5.66712 4.19386 4.97077 5.47080 5.46439 5.49139 4.65741 6.02203 5.71087 5.56473 5.80956 5.42261 5.44007 5.59465 5.35693 0.10933 4.16491 27 W - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 28 3.58325 6.34961 0.98907 1.35428 5.60625 3.70250 4.32391 5.19177 3.45606 4.62319 5.50326 2.12190 4.37525 3.49852 4.14727 3.41087 3.88981 4.70860 6.76658 5.15887 28 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 29 4.10816 0.12302 5.62020 5.60375 5.57106 4.44372 6.08514 5.03998 5.51500 4.81789 5.98886 5.42911 5.18989 5.81486 5.44300 4.37280 4.64432 4.67680 6.63136 5.82318 29 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 30 2.81364 4.84958 2.52976 2.79712 4.08542 2.68481 3.93381 2.75343 2.79020 3.12716 3.97122 3.28566 4.08114 3.12704 3.22924 2.36870 1.75441 2.60188 5.42150 4.12374 30 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 31 2.92464 5.43240 2.11671 2.53223 4.77371 1.83087 3.85533 4.25819 2.09626 3.73342 4.48555 2.41328 4.05020 2.96221 2.45110 2.87738 3.16080 3.82346 5.86298 4.44910 31 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.82517 5.54752 0.61958 0.77255 0.48576 0.95510 32 3.65150 5.80271 4.16288 3.33854 5.39113 4.22476 4.02849 4.67163 0.89662 4.00189 4.86760 3.70669 4.54619 1.78843 1.80896 3.61156 3.77014 4.33926 5.96003 4.85145 32 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00809 4.82127 * 0.61958 0.77255 0.00000 * //