Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype11b.hmm @ 30:6669fd407dc9 draft default tip
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| author | johnheap |
|---|---|
| date | Fri, 07 Jun 2019 11:07:05 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype12.2 LENG 28 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 30 09:30:38 2015 NSEQ 11 EFFN 11.000000 CKSUM 1188814779 STATS LOCAL MSV -7.0433 0.72870 STATS LOCAL VITERBI -7.1696 0.72870 STATS LOCAL FORWARD -3.3150 0.72870 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.75755 2.86320 2.94237 2.92244 3.64495 1.88651 3.48503 3.32484 2.72914 2.74552 4.12302 2.90340 3.92729 3.74754 3.27942 2.59681 3.29265 2.84135 4.87562 2.66668 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.18528 6.05380 1.79110 0.61958 0.77255 0.00000 * 1 3.45162 5.80235 1.54775 3.15955 5.08886 1.96832 4.44173 4.54016 3.23229 4.09132 2.64813 1.83292 4.62201 3.56937 3.71984 3.44237 2.50475 4.16723 6.28420 2.78698 1 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00419 5.87271 6.59506 0.61958 0.77255 1.33581 0.30509 2 2.34073 4.85519 5.09565 4.49861 1.94941 2.45134 4.87747 3.29540 4.34346 1.82073 3.97229 4.62022 4.92771 4.52901 2.37388 2.45018 3.65979 2.31139 5.47138 2.58465 2 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00419 5.87271 6.59506 0.61958 0.77255 1.33581 0.30509 3 3.89959 5.25148 5.67736 5.13518 1.36435 5.00279 1.81431 3.70306 4.93418 2.26240 4.37498 5.04857 5.35363 5.01734 4.94348 2.69815 4.12919 2.27784 5.23374 1.74134 3 f - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00419 5.87271 6.59506 0.61958 0.77255 1.33581 0.30509 4 3.62824 5.37442 4.42685 3.85713 4.23638 4.55175 2.65057 1.99543 2.18568 3.57795 4.48265 4.24962 4.92989 4.05452 3.91871 2.28846 3.85384 3.67031 5.70648 1.07180 4 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00419 5.87271 6.59506 0.61958 0.77255 0.17967 1.80515 5 5.56775 6.63635 7.57461 7.02760 4.51160 7.17694 7.42463 1.74124 6.95362 0.27498 4.21004 7.42622 6.85694 6.50443 6.74864 6.73150 5.74316 3.98153 6.96553 6.15413 5 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 6 5.37902 7.34053 4.66423 1.73401 7.40575 0.24959 6.49078 7.25699 5.78769 6.63617 7.66033 5.29759 6.16788 5.78818 6.30809 5.36411 5.82913 6.61969 8.21053 7.22988 6 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 7 4.89003 7.77828 1.88730 1.20371 7.03475 0.74389 5.55484 6.70246 4.88778 6.09300 7.08942 4.24259 5.54564 4.75989 5.74023 4.66308 5.24163 6.17052 8.22877 6.51050 7 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 8 3.51963 5.22078 4.42960 3.86129 4.35462 2.79891 4.76397 2.63088 1.96414 2.44527 2.49311 1.63005 4.88618 4.11034 4.15759 2.75550 2.66272 2.45399 5.80544 4.57475 8 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.16312 6.05380 1.90943 0.61958 0.77255 0.48576 0.95510 9 3.42410 5.14521 4.30063 3.73060 4.27525 4.40018 1.92089 1.84029 3.65791 3.35585 2.65592 2.54711 1.95349 3.97830 2.65659 3.64668 3.65499 3.41969 5.71856 2.73665 9 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10015 5.89477 2.38004 0.61958 0.77255 1.26931 0.32993 10 4.17392 6.67748 1.71218 3.40365 6.24046 1.00210 2.23199 5.81492 4.20694 5.28289 6.13086 3.97974 5.11601 4.29660 4.83936 1.59662 4.51906 5.29046 7.41941 5.88152 10 g - - - 2.68669 4.42276 2.77570 2.73174 3.46405 2.40464 3.72069 3.29405 2.67791 2.69406 4.24740 2.90040 2.73790 3.18197 2.89851 2.37937 2.77399 2.98569 4.58528 3.61554 0.81771 0.58504 6.52148 0.02509 3.69773 1.52197 0.24626 11 3.51996 5.55158 4.02531 3.44845 4.75533 4.35271 2.56637 2.01470 1.66623 2.46173 4.63315 1.36477 4.73393 3.69060 3.54134 3.59618 3.73966 3.86902 6.03506 4.75419 12 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00451 5.79913 6.52148 0.61958 0.77255 1.52197 0.24626 12 3.32407 5.83782 1.81127 2.99719 5.18334 1.88668 4.28065 4.67066 3.02247 4.14423 4.88184 2.46165 4.48278 2.42968 2.49965 2.33288 2.23310 4.22944 6.27176 4.85793 13 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00451 5.79913 6.52148 0.61958 0.77255 0.44595 1.02224 13 3.83495 5.88097 1.76348 3.64831 5.13897 1.43334 4.98526 4.62127 3.97514 4.27567 5.14125 4.15075 1.87488 4.21552 4.44588 3.90497 4.13198 2.37022 6.51444 1.88526 14 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00379 5.97281 6.69515 0.61958 0.77255 0.26940 1.44324 14 3.83166 0.44663 6.16105 5.91742 6.36382 4.55828 6.43493 5.81924 5.39296 5.50572 6.29001 5.38218 5.40745 5.81556 2.40046 2.20336 2.46404 5.04179 7.68132 6.63197 15 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 15 2.48067 6.04126 2.00783 3.24056 5.39560 2.54862 4.54570 4.87549 2.41729 4.36945 5.12206 3.78833 4.72827 3.65360 3.80631 1.22958 3.81520 4.44660 6.51344 2.08343 16 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06165 6.05380 2.85710 0.61958 0.77255 0.48576 0.95510 16 4.16197 5.79375 6.18090 5.93724 5.11389 0.50298 6.42559 3.88042 5.80042 1.68280 4.99658 5.68997 5.73005 5.95717 5.83553 4.53122 4.61469 2.19507 6.97930 5.82907 17 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00370 5.99586 6.71820 0.61958 0.77255 0.30705 1.33034 17 3.48387 5.55298 3.97564 3.41574 4.75780 2.06040 4.55999 2.70957 1.92788 3.79611 4.63439 3.91639 2.77184 3.74320 2.23988 2.56702 2.56428 2.48398 2.73364 4.77543 18 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 18 2.11780 5.90335 2.41121 3.17674 2.71183 2.06993 4.43376 4.69034 3.18095 4.19839 4.95273 1.75350 4.63553 3.53978 2.62199 2.48116 3.69086 4.28050 6.35346 2.82119 19 n - - - 2.68678 4.42286 2.77266 2.72883 3.46414 2.40454 3.72555 3.29415 2.67801 2.69415 4.24750 2.90211 2.73800 3.18207 2.89861 2.37947 2.77580 2.98579 4.58537 3.61564 0.30091 1.35203 6.77614 0.68969 0.69661 0.48576 0.95510 19 2.49140 5.95662 3.89868 1.83097 2.62599 1.27880 4.66417 4.76997 3.40466 4.31626 5.10647 3.94190 4.83326 3.79504 1.62414 3.65491 3.90314 4.38677 6.49428 5.13473 22 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 20 3.49270 6.00100 3.73006 2.38699 5.35208 2.57871 4.43907 4.83530 1.58295 4.30416 5.04218 1.85896 4.65219 1.95044 2.42545 2.46808 3.72230 4.39532 6.42557 5.02069 23 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 21 4.00367 6.60204 1.60608 2.44148 5.92176 2.47015 4.88110 5.43879 2.44672 4.89758 5.67278 1.61679 5.02295 4.00734 4.30696 1.45450 4.26031 4.98337 7.02839 5.55339 24 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 22 1.98887 4.99066 5.57551 4.96511 4.09525 4.79903 5.14033 2.45274 4.75650 2.33030 2.41507 4.95806 5.16054 4.89268 4.77222 2.59373 2.41592 1.12191 5.63592 4.45871 25 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 23 5.49386 0.14184 6.83134 6.83247 6.24730 5.78568 2.28091 7.11933 6.60935 6.49839 7.62238 6.67311 6.53077 7.00956 6.57397 5.71502 6.03725 6.54029 7.54172 6.24565 26 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 24 0.71977 5.81096 6.46859 6.38297 6.03383 4.89203 6.93842 4.00276 6.28226 4.68808 5.84937 5.76673 5.71149 6.41086 6.27251 4.40579 4.60922 0.84393 7.80659 6.68572 27 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 25 1.46028 5.67266 5.78584 5.46746 6.05006 1.19047 6.22425 5.49360 5.39392 5.18836 5.99165 5.21718 5.33481 5.59252 5.57514 1.96076 1.76253 4.84425 2.38465 6.30432 28 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 26 5.70868 7.09001 6.01276 5.63115 4.23362 5.92965 5.42351 6.07446 1.69074 5.22287 6.48358 5.69026 6.36004 5.38916 4.65479 5.65479 5.90221 5.92010 5.83828 0.29622 29 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 27 3.46173 5.82299 3.77399 2.40910 2.93078 2.52575 2.35438 4.55873 1.57647 2.67087 4.87923 3.75415 4.65203 3.57286 3.69489 1.93984 3.69288 4.18282 6.28888 2.83187 30 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00350 6.05380 6.77614 0.61958 0.77255 0.48576 0.95510 28 2.49150 5.95508 3.70318 1.86959 5.29601 1.74406 4.41652 4.77890 1.77844 4.25842 4.99707 2.77059 4.62241 2.59511 3.64398 3.41867 3.68582 2.77291 6.39003 2.98671 31 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00235 6.05266 * 0.61958 0.77255 0.00000 * //