Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype2b.hmm @ 30:6669fd407dc9 draft default tip
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| author | johnheap |
|---|---|
| date | Fri, 07 Jun 2019 11:07:05 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype2.2 LENG 29 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 16 13:48:31 2015 NSEQ 42 EFFN 3.186401 CKSUM 2149497564 STATS LOCAL MSV -7.0185 0.71993 STATS LOCAL VITERBI -7.2652 0.71993 STATS LOCAL FORWARD -4.4220 0.71993 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.25053 5.40393 2.90786 2.77490 3.56997 2.97518 2.59573 3.34771 2.27008 2.21710 3.32368 3.55963 4.37213 2.74568 2.54214 3.15044 3.53219 2.70921 6.01663 4.51593 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.00000 * 1 2.90292 5.41152 1.92318 2.28062 4.75155 3.65087 3.85798 4.23722 2.15500 3.71488 4.45594 1.99703 4.05793 2.95822 3.10164 2.32720 2.58119 3.43153 5.84616 4.43254 1 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 2 0.59633 4.72379 4.48494 4.12891 4.84056 3.08054 5.01169 4.19451 4.10041 3.93903 4.78030 4.11236 2.41403 4.34697 4.35379 3.04361 3.33345 2.66384 6.23525 5.06542 2 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 3 3.06311 5.58431 2.74877 1.04228 4.91177 3.69917 3.98380 4.40133 2.32229 3.88113 4.64230 2.27919 4.16034 3.09801 3.28438 3.00666 3.30536 3.16426 6.01826 4.58907 3 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 4 2.88554 4.52170 3.91575 3.34398 3.64590 3.90239 4.16966 2.48881 3.08602 2.72692 1.84541 2.45817 4.27887 3.56455 3.17861 2.75084 2.77314 2.54195 5.11439 2.47937 4 m - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 5 3.84317 6.63952 0.80384 1.13256 5.89282 3.85386 4.54299 5.51673 3.76530 4.93743 5.87252 3.29695 4.56244 3.73476 4.51389 3.64550 4.17005 5.02195 7.06034 5.42431 5 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 6 1.15281 4.75769 4.55460 4.24219 5.27453 2.35597 5.17748 4.74298 4.24105 4.40611 5.17403 4.14877 4.35126 4.46989 4.49743 1.00985 2.73758 4.00039 6.59349 5.44912 6 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 7 4.06335 5.97943 4.61700 3.82056 5.21417 4.50717 3.00090 4.93721 2.48820 4.25729 5.19378 4.10942 4.87365 3.50867 0.40645 4.05476 4.18540 4.64207 6.04283 4.86080 7 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 8 4.71964 6.23708 5.32447 4.74772 5.91242 4.82553 5.24235 5.66602 3.49026 4.97410 6.02613 4.99065 5.35269 4.49192 0.14029 4.81453 4.96351 5.35268 6.59358 5.73205 8 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 9 4.64335 5.83902 5.93948 5.68072 3.96646 5.37468 6.06162 3.28968 5.49324 0.18767 3.81558 5.89888 5.69807 5.55886 5.45193 5.27981 4.91447 3.58058 6.09528 5.04519 9 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 10 3.96838 5.27374 5.60835 5.25443 0.58932 5.00024 4.80488 2.98492 5.09462 2.57512 3.96166 5.09137 5.35713 5.08526 5.08709 4.43771 4.25132 1.87322 4.95309 3.33498 10 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 11 3.81877 5.01355 5.92733 5.50823 4.43202 5.44610 6.36337 1.72635 5.46234 2.81628 4.14655 5.66107 5.69056 5.75269 5.64913 4.92138 4.09396 0.43768 6.63719 5.38773 11 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 12 4.47317 5.63811 6.29062 5.75253 3.56717 5.84844 6.09629 2.83361 5.54153 0.29270 2.84786 6.03561 5.75775 5.36351 5.45755 5.32820 4.66862 3.18519 5.91088 4.97944 12 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 13 4.46680 6.01282 5.31479 5.36444 6.27796 0.07714 6.27693 6.25480 5.65638 5.69195 6.75599 5.48401 5.40386 5.90182 5.66624 4.68308 5.00871 5.59531 6.98477 6.45019 13 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 14 0.39728 5.18622 3.62093 2.76325 5.20993 3.79059 4.89887 4.54109 3.87656 4.27896 5.17466 3.89216 4.52842 4.15619 4.22928 3.34181 3.67606 4.06101 6.50526 5.26484 63 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 15 3.84993 5.88915 3.91828 3.52643 5.31170 4.28511 4.44241 4.88868 2.75455 4.26787 5.20334 3.93299 4.76699 0.43908 2.58767 3.84566 4.07092 4.55330 6.20815 5.01822 64 Q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 16 4.48288 6.19201 4.72951 4.26526 5.87152 4.68142 4.95979 5.44500 0.18431 4.79787 5.79825 4.59575 5.18426 4.16197 3.35400 4.51796 4.69697 5.12521 6.52322 5.58981 65 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 17 4.90098 6.28158 4.91869 4.86696 4.74767 4.86330 0.11602 5.83415 4.74550 5.11025 6.32065 5.19378 5.49635 5.28218 4.88159 5.00890 5.28267 5.53487 6.11860 4.69360 66 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 18 4.64335 5.83902 5.93948 5.68072 3.96646 5.37468 6.06162 3.28968 5.49324 0.18767 3.81558 5.89888 5.69807 5.55886 5.45193 5.27981 4.91447 3.58058 6.09528 5.04519 67 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 19 3.26111 5.66488 3.35242 2.48660 5.06767 3.90763 2.79461 4.49587 1.84397 3.92747 4.72147 3.37686 4.31579 1.05173 2.84817 3.21389 3.46755 4.09569 5.99704 4.68695 68 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 20 1.68809 5.31602 3.12881 1.51625 4.68284 3.67163 3.94127 4.14335 2.71383 3.67019 4.44000 3.19257 4.10724 2.85118 3.19924 2.39037 2.43819 3.73677 5.84014 4.45354 69 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 21 3.39781 5.03360 4.94568 4.61742 4.06776 4.25042 5.25653 3.16055 4.32991 2.61687 0.50008 4.65510 4.86657 4.69107 4.46295 3.73235 2.91943 3.11726 5.92345 4.75587 70 M - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 22 3.72491 6.49367 0.64200 1.65823 5.72897 3.82116 3.26534 5.33271 3.59781 4.76346 5.65558 3.25810 4.50117 3.63237 4.29149 3.54741 4.03450 4.85216 6.89875 5.28569 71 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 23 2.94828 5.44404 2.79453 2.36349 4.79574 3.39121 3.87576 4.27299 1.20083 3.74205 4.48890 2.84144 4.09269 2.97676 2.22723 2.90758 2.97122 3.83950 5.86224 4.46521 72 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 24 4.90098 6.28158 4.91869 4.86696 4.74767 4.86330 0.11602 5.83415 4.74550 5.11025 6.32065 5.19378 5.49635 5.28218 4.88159 5.00890 5.28267 5.53487 6.11860 4.69360 73 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 25 3.83713 5.01064 5.98357 5.56092 4.47309 5.53942 6.46578 1.10556 5.53905 2.84198 4.16787 5.72963 5.74406 5.83518 5.73728 5.01649 4.10563 0.69598 6.71052 5.45858 74 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 26 2.71624 5.61331 3.32699 2.52022 5.01149 3.87245 3.99831 4.44269 1.22911 3.88696 4.67453 3.34619 4.28015 1.49817 2.87473 3.16209 3.41673 4.03957 5.97059 4.64895 75 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 27 3.83502 5.92883 3.85977 3.44921 5.52428 4.26055 4.34137 4.94123 0.41325 4.31006 5.21029 3.10953 4.72442 3.48843 2.78165 3.80858 4.03295 4.58260 6.23629 5.08825 76 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 28 0.35767 4.78863 4.91002 4.72462 4.99201 3.68636 5.44857 3.87135 4.64189 3.92546 4.94688 4.41837 4.50611 4.86419 4.75946 3.18216 3.48186 2.73465 6.52077 5.37306 77 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01032 4.97440 5.69675 0.61958 0.77255 0.48576 0.95510 29 2.93519 5.21464 3.29113 2.72311 4.49319 3.73481 3.17327 3.91889 2.42067 1.89245 4.27824 3.24328 4.12197 1.67645 2.66659 2.62772 2.81817 3.57018 5.67894 4.33975 78 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00696 4.97104 * 0.61958 0.77255 0.00000 * //