Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype15a.hmm @ 24:728b1d375b41 draft
Uploaded
| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:03:36 -0400 |
| parents | 36cb22bd911d |
| children |
line wrap: on
line source
HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype16.1 LENG 39 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Jul 28 16:37:39 2015 NSEQ 77 EFFN 17.346619 CKSUM 289630424 STATS LOCAL MSV -7.5613 0.71952 STATS LOCAL VITERBI -7.9564 0.71952 STATS LOCAL FORWARD -4.0575 0.71952 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.61130 5.79592 3.10896 1.85515 4.28921 3.41619 4.00756 2.62370 2.16343 2.73772 4.59503 3.17408 3.58881 2.49090 2.70320 2.76931 2.49708 3.91006 6.23695 4.69789 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.00000 * 1 0.13094 6.90943 5.26738 2.47376 7.46663 5.41620 6.90702 7.09957 6.18540 6.67992 7.55452 5.67750 6.23621 6.22804 6.54413 5.09362 5.50777 6.27075 8.54807 7.49492 1 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 2 5.75640 6.84729 7.83246 7.30199 3.33296 7.44337 7.80401 0.60357 7.25658 1.04485 4.67711 7.64752 7.20781 6.92014 7.12705 6.95577 5.95309 3.19772 7.42241 6.57142 2 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 3 3.09245 6.26700 2.91778 1.94619 5.61224 4.52968 4.71672 3.36915 2.58440 3.53517 5.30762 2.44249 2.41916 2.23019 2.25543 3.71819 2.73105 2.25851 6.69958 5.28853 3 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 4 2.62805 6.26865 2.83333 1.52637 5.61465 4.52928 4.71623 4.10861 1.59257 2.83097 5.30907 3.30348 4.92277 2.21009 3.13012 3.07260 2.78743 3.47250 6.70078 5.28927 4 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 5 5.24547 8.15250 0.75351 0.88281 7.34709 5.17960 3.77259 7.00627 5.20342 6.40696 7.38395 4.61049 5.91292 5.10519 6.02552 5.02022 5.58582 3.23371 8.55077 6.83524 5 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 6 3.94428 7.94177 2.46901 0.27224 7.18140 5.14401 5.80426 6.78901 3.11974 6.19828 7.11530 4.57596 5.84275 3.11123 5.69194 4.91260 5.42788 6.29194 8.33796 6.69240 6 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05986 6.48314 2.87214 0.61958 0.77255 0.48576 0.95510 7 2.74648 6.24043 3.97916 1.36486 5.58843 3.14588 4.68609 5.07302 1.43069 4.54493 5.28136 3.96997 4.89581 1.69538 3.18772 3.69325 3.30998 3.74378 6.66963 5.26171 7 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05393 6.42569 2.97821 0.61958 0.77255 1.01275 0.45133 8 2.96989 5.91952 4.08596 1.91463 2.47486 4.52483 4.72728 1.76688 2.30950 3.14184 3.57881 4.05034 3.20231 2.45443 2.75853 3.72646 2.48738 4.25456 6.41798 5.07797 8 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00254 6.37429 7.09664 0.61958 0.77255 0.52699 0.89252 9 4.47936 6.83018 4.75056 2.05529 6.30595 5.13277 3.65446 5.68932 1.39821 5.07510 5.88231 3.24083 5.50080 0.83532 2.97921 4.43351 4.65936 5.29928 7.09731 5.85476 9 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00744 6.43789 5.14741 0.61958 0.77255 0.28538 1.39323 10 2.88826 6.26338 4.00206 1.62503 5.60843 3.51634 4.71381 3.22459 1.26189 3.95368 5.30409 3.99443 3.95051 1.72506 3.53658 3.06956 3.48529 4.65402 6.69600 5.28528 10 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00229 6.47831 7.20066 0.61958 0.77255 0.54387 0.86868 11 4.02530 6.48304 4.30777 2.91872 5.86943 4.77079 4.88499 5.32248 1.64675 3.78488 4.31924 3.27053 5.15166 0.81868 2.12757 3.51201 4.24043 4.89880 6.85876 5.50795 11 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04756 6.47832 3.10303 0.61958 0.77255 0.54387 0.86868 12 3.75853 6.26544 3.53867 2.31578 5.61680 4.52725 3.08487 5.09949 0.95282 2.96638 5.30631 3.13038 4.91971 3.27111 1.72660 3.72004 3.44849 4.65986 6.68988 5.28600 12 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.07271 6.43314 2.68064 0.61958 0.77255 0.69409 0.69220 13 1.75874 6.19591 2.90333 3.05511 5.54237 4.45598 4.64251 5.02870 1.36980 2.46709 5.23641 2.94602 3.45311 2.20432 2.40564 3.64521 3.91447 4.58734 6.62733 5.21640 13 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.15801 6.37983 1.93473 0.61958 0.77255 0.90249 0.52013 14 2.33157 6.10569 3.84471 2.39266 5.45235 4.36831 3.38464 4.93772 1.69418 3.24937 5.14632 3.37891 4.76144 2.74408 1.25589 2.86256 3.82619 4.49727 6.53644 4.00700 14 r - - - 2.68622 4.42267 2.77486 2.72925 3.46396 2.40555 3.72537 3.29396 2.67666 2.69372 4.24732 2.90389 2.73782 3.18189 2.89669 2.37929 2.77562 2.98561 4.58519 3.61545 0.35035 1.22205 6.97638 0.02989 3.52524 0.11492 2.22046 15 2.62299 7.89152 2.79238 0.26670 7.19364 5.15119 5.82356 6.79807 4.98807 6.21018 7.13017 4.59584 5.85398 5.00957 3.10044 4.92150 5.43532 6.29418 8.34578 6.71173 16 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 16 2.90537 6.47618 2.07679 0.66869 5.81628 4.63994 4.88151 5.31011 2.65015 4.77945 5.52318 3.22478 5.07100 3.11802 4.15625 2.94954 3.62595 4.86511 6.90654 5.47995 17 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 17 1.88300 6.28484 3.35923 0.95634 5.63141 4.53961 4.72863 5.11819 2.02371 4.59026 5.32560 4.00636 3.95392 2.37705 3.19507 3.73197 3.21713 4.67639 6.71591 5.30427 18 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01348 6.48314 4.43439 0.61958 0.77255 0.48576 0.95510 18 2.38397 6.32467 4.07645 1.15411 5.68108 4.58959 3.46599 5.15963 1.29841 4.62522 5.36603 4.05697 4.98062 3.26231 2.34004 3.45130 3.49392 4.72220 6.74193 5.34577 19 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03539 6.47196 3.40453 0.61958 0.77255 0.61519 0.77770 19 2.76852 6.23607 3.97360 2.69627 5.58185 4.49835 3.14529 5.06784 1.88288 3.42042 4.00846 3.96569 3.61273 2.06395 1.26655 2.50654 3.53114 4.62711 6.66806 5.25736 20 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00238 6.43895 7.16130 0.61958 0.77255 0.41582 1.07822 20 4.00044 6.46347 4.28188 2.58729 5.84762 4.74850 3.56700 5.30344 1.02030 3.90344 3.14905 2.75375 5.12994 2.22042 1.61944 3.96178 4.21671 4.87781 6.84272 5.48748 21 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02021 6.47196 3.99187 0.61958 0.77255 0.41258 1.08453 21 4.24150 6.67228 3.69718 2.13759 6.08773 4.93096 5.02162 5.52018 1.09623 4.94283 5.72090 4.39800 5.32052 1.34756 1.87244 4.19594 3.87393 5.10599 7.00794 5.69094 22 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01946 6.46547 4.03351 0.61958 0.77255 0.37978 1.15204 22 3.74966 6.26306 3.10075 1.55896 5.60988 4.52151 3.65000 5.09648 2.23657 4.56861 5.30350 2.55537 4.91541 1.19431 2.65214 3.71118 3.98070 3.90198 6.69419 3.59674 23 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.07629 6.46634 2.63248 0.61958 0.77255 0.67391 0.71276 23 3.27630 6.21574 3.29912 1.25466 5.56181 3.47568 3.88302 5.04918 1.86430 4.52144 5.25644 3.54226 3.41611 1.67123 3.88947 2.31468 3.93213 4.60697 6.64747 5.23478 24 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00249 6.39254 7.11489 0.61958 0.77255 0.20495 1.68570 24 3.07558 5.28891 3.24098 5.15187 2.87433 5.05633 5.38478 1.24873 4.95902 1.15844 4.40721 2.56189 5.42104 5.10935 4.19712 3.71116 4.13037 2.78547 5.90969 4.73127 32 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 25 3.78745 6.18630 4.07841 3.52548 3.19952 4.57464 2.24946 4.95213 3.51564 4.47808 5.24429 2.98759 3.89290 3.55953 3.01104 1.38603 1.19252 4.55946 6.64754 5.26593 33 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 26 2.66966 6.35682 1.89611 1.56795 5.69925 4.58667 4.80206 3.21702 3.55422 4.66333 5.40515 2.30182 4.99879 3.90316 4.05241 2.11933 1.67604 4.74747 6.79472 5.37930 34 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 27 2.33692 6.26840 2.91056 3.45075 5.61369 4.53142 2.77885 5.09952 1.74259 3.12700 5.30909 3.64670 1.53874 2.61517 3.41248 3.72021 2.10365 4.65917 6.70078 5.29010 35 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 28 3.91044 5.29185 5.82691 5.21481 3.03142 5.07525 5.40613 1.24288 3.08653 1.23082 2.92964 5.22205 3.20863 2.74105 5.03444 4.38471 2.95484 3.35146 5.91210 4.73613 36 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 29 1.43962 3.38596 4.57444 2.59589 3.22132 4.77127 3.34190 2.98780 3.97599 2.49321 4.73778 4.45092 5.15326 3.62964 1.34638 3.00215 4.05931 3.92194 6.20881 4.95707 37 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 30 4.60801 6.87319 5.04066 4.31838 6.35734 5.27409 3.19831 2.91457 1.11022 5.10485 5.93029 2.90652 5.61748 4.31374 1.66148 4.57585 1.39027 5.34842 7.12571 5.92564 38 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 31 3.90131 5.28442 5.81062 5.19829 2.98176 5.06436 5.39360 1.99918 3.08488 0.92253 4.40213 5.20825 5.42839 5.13512 3.23601 3.60433 2.95578 3.53141 5.90383 1.91477 39 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 32 3.80758 6.25531 2.95952 1.45859 3.20254 3.98257 4.77685 3.89762 3.53012 3.18104 5.30471 0.91287 4.97590 3.88444 3.15876 3.78037 4.04009 4.63093 6.70376 5.30670 40 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 33 3.87046 5.40646 2.15699 2.11709 4.51702 4.93864 5.22686 2.20288 4.47054 1.51914 2.59784 2.54389 5.31101 4.71998 4.71209 4.21226 2.41058 2.85157 3.57506 4.80963 41 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 34 2.08069 5.64953 5.69562 5.19019 5.00649 4.97352 5.75314 3.02361 5.07816 2.83274 5.00905 3.21710 5.54142 5.29166 5.24805 3.19412 0.49921 4.08281 6.50438 5.32207 42 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 35 4.12415 6.13645 5.17284 4.74461 6.14998 3.02817 5.85808 3.41026 4.72751 5.21505 6.01427 2.87230 5.54528 5.06314 3.84820 0.39216 2.39220 5.06182 7.43176 6.18058 43 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 36 4.61070 6.68108 3.70219 4.74273 7.22703 0.21038 6.39337 6.80408 5.56021 6.35616 7.18238 5.14037 5.89554 5.64310 3.40697 2.51911 5.13933 5.95862 8.44931 7.12194 44 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 37 2.58454 6.11906 6.76861 6.72416 6.84855 4.95391 7.13096 3.21027 6.56465 6.00862 6.79349 5.89386 5.83070 6.61662 6.50106 1.85229 0.36394 5.41976 8.23905 7.21971 45 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 38 3.89249 5.32816 5.52373 4.92961 3.29413 5.01953 2.97142 2.46474 4.77887 1.97523 4.44440 5.06648 0.94840 3.92884 4.90250 1.98105 3.61630 3.57915 5.94280 4.75637 46 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00227 6.48314 7.20549 0.61958 0.77255 0.48576 0.95510 39 4.75362 6.02352 6.87644 6.38649 5.41755 6.17162 6.88676 0.34082 6.27484 3.08284 5.22768 6.42331 6.51092 6.48479 6.36999 2.48965 2.92409 2.68095 7.30106 6.09268 47 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00153 6.48240 * 0.61958 0.77255 0.00000 * //