view data/Motifs/Phylotype12.hmm @ 22:98bd8a0f0901 draft

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author johnheap
date Tue, 04 Jun 2019 18:01:40 -0400
parents 36cb22bd911d
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HMMER3/f [hmmer3.1-snap20121016 | October 2012]
NAME  Phylotype13.3
LENG  26
ALPH  amino
RF    no
MM    no
CONS  yes
CS    no
MAP   yes
DATE  Wed Jul 29 15:10:18 2015
NSEQ  41
EFFN  30.216980
CKSUM 2444189330
STATS LOCAL MSV       -6.2563  0.72009
STATS LOCAL VITERBI   -6.5810  0.72009
STATS LOCAL FORWARD   -4.0849  0.72009
HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   3.13085  4.16814  2.53748  2.80871  3.61513  2.12326  2.32880  3.98863  2.72121  2.99470  4.22031  2.95070  4.09066  3.86543  2.67260  2.60940  2.70619  3.20397  4.61308  2.83857
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.00000        *
      1   4.83303  7.03444  5.28131  4.61534  6.39189  5.56956  2.04820  5.77045  1.58328  3.23933  2.78040  3.10111  5.92732  4.71380  1.27421  4.83653  2.01980  5.43870  3.02189  6.14823      1 r - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      2   5.02401  7.65122  2.09690  4.28894  6.94069  5.42593  1.17480  6.48733  4.79765  5.94142  6.73735  1.61126  2.55729  1.99533  5.37110  3.45824  5.29084  6.02874  8.06601  2.63748      2 h - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      3   5.93694  7.83109  7.08968  5.77116  7.73391  6.37996  6.05982  6.86321  0.58655  6.10293  7.02877  5.95380  6.69188  5.18504  1.69269  1.99573  2.34234  6.55969  7.97812  7.01912      3 K - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      4   6.44586  7.53366  7.72613  7.46520  2.68584  7.23978  6.17654  5.69394  7.02367  0.44036  6.16692  6.93592  3.68834  6.94641  1.99579  6.63566  6.64306  5.81237  6.26580  2.25012      4 L - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      5   6.37446  3.13047  8.11566  8.19865  8.59908  0.05314  8.65679  8.55002  8.24715  7.97254  8.95047  7.82558  7.49360  8.40562  8.04707  6.61738  6.95732  7.67957  9.23027  8.89387      5 G - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      6   6.95763  8.44402  6.85139  3.64383  8.13166  0.06465  8.18689  8.70642  7.58248  7.96280  9.10318  7.34252  7.62515  7.75788  7.75470  7.08745  7.44670  8.09719  3.55749  8.13289      6 G - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.02533  7.01839  3.72474  0.61958  0.77255  0.48576  0.95510
      7   2.20122  5.74477  6.01781  5.41915  1.24873  5.45982  5.77808  4.18390  3.44919  3.20435  3.47446  5.52904  5.82639  5.43979  2.04615  2.34227  2.08470  3.06857  6.36177  2.85918      7 f - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00136  6.99442  7.71676  0.61958  0.77255  0.29580  1.36232
      8   4.18520  2.13746  1.77453  2.30374  6.04550  4.95844  2.27698  5.53243  2.69713  5.00491  3.88059  2.42548  5.35195  3.00588  2.26418  2.32431  3.44138  5.09043  7.13089  5.71913      8 d - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
      9   4.28886  6.80913  1.55138  1.12829  6.15342  2.07018  5.23722  5.64222  2.65202  5.11309  3.76431  3.54260  5.43774  4.33683  3.02690  4.24526  4.52228  5.19985  7.23895  2.44746      9 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     10   1.97986  7.70536  1.38283  4.56146  7.40316  5.55197  0.91945  6.96501  5.35971  6.43320  7.27049  2.94990  6.23424  5.44675  5.99001  2.31258  3.64467  6.40515  8.57356  7.04584     10 h - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.51159  7.01839  0.91738  0.61958  0.77255  0.48576  0.95510
     11   4.56784  7.15459  3.01589  3.85557  6.37385  4.98268  0.98937  5.98267  2.93102  5.43829  6.24313  1.14392  5.53818  4.54217  4.81466  3.36578  4.82998  5.53878  7.52069  2.43164     11 h - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00222  6.50901  7.23136  0.61958  0.77255  0.04148  3.20327
     12   4.49241  6.72176  4.88757  4.35933  2.07084  5.25438  5.52999  5.56727  3.25468  5.12372  5.92488  2.01678  2.29978  4.66772  3.72021  3.24831  0.76275  5.19190  7.30680  5.98297     12 t - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     13   1.90506  6.72478  4.45345  1.03729  6.06771  4.99248  5.18801  2.34402  3.07315  5.03015  5.77138  4.46328  3.14698  2.02928  4.41423  2.32448  4.46062  5.11539  7.16248  5.75499     13 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     14   1.80112  6.62583  2.01893  5.01653  6.18072  3.38516  6.23281  5.61593  5.29385  2.23227  6.16428  5.39853  6.05915  5.51624  5.69703  0.96891  5.08889  5.26128  7.58510  2.02052     14 s - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     15   6.13061  2.24355  0.54965  6.16104  4.63351  6.66327  2.33198  6.11886  6.60506  1.97210  6.68577  6.30389  7.12488  6.54521  6.76054  6.18536  6.39500  5.99318  6.30272  3.05492     15 D - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     16   1.95825  6.99117  7.46755  7.53354  7.62773  0.35455  7.94493  7.50764  7.46701  7.13782  7.90671  6.74863  6.65327  7.51621  7.35783  5.33367  5.71346  6.50132  1.97621  7.84865     16 G - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     17   4.96731  7.23366  5.40097  4.78115  6.88857  2.26081  5.75719  6.27753  2.01380  5.67865  6.48326  3.77189  6.05848  4.87184  1.53575  0.92823  2.49821  5.84742  7.70532  6.47403     17 s - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     18   5.45771  7.83974  0.76474  4.72348  7.84404  1.97761  6.58724  7.46777  5.90454  6.93203  7.84531  2.20233  6.41384  5.80167  6.66169  2.14302  1.96209  6.77873  9.07399  7.47450     18 d - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     19   2.22732  7.56067  4.53075  0.55199  6.95985  5.45143  5.86559  6.46714  3.42232  5.91309  6.70883  4.92559  6.00320  2.32657  5.17554  1.99073  5.27799  6.00592  8.02657  6.57465     19 E - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     20   4.28004  6.26352  4.84491  2.95516  3.30123  5.16265  5.37315  4.83748  1.25910  2.25853  5.35047  4.76088  5.54703  3.40619  1.88350  4.38337  3.05565  2.04218  6.80010  2.43144     20 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     21   4.93159  7.28165  5.26997  4.61925  6.75778  5.61124  1.73113  6.14681  1.92762  5.54121  6.34240  1.56729  5.97493  4.71639  2.17265  1.75726  2.04100  5.75308  7.57067  6.32190     21 n - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     22   4.75272  6.09971  6.73348  6.12440  2.04144  5.95488  6.28642  1.17557  5.91720  2.75430  1.56261  2.29268  6.27731  6.01018  5.91225  5.27644  2.01603  4.16956  6.70597  5.55610     22 i - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     23   6.51033  7.82223  7.27100  7.28197  4.63260  6.94811  0.47518  6.88156  7.05812  5.96473  7.34782  6.83286  7.45968  7.06151  7.00524  6.48252  1.40824  6.73208  6.30601  2.23840     23 H - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     24   2.99744  2.22683  7.48651  7.47795  7.30755  5.58418  7.83782  5.63330  7.29355  6.17013  7.15753  6.55007  1.98147  7.32730  7.19287  5.08916  5.40535  0.38972  8.87665  7.84637     24 V - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     25   5.54915  6.99642  7.10987  6.09512  5.27092  6.38466  0.93302  5.41185  4.65818  2.43293  5.99012  6.14353  6.68334  5.59763  1.07796  5.81157  5.70922  2.22355  3.87132  5.30891     25 h - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00133  7.01839  7.74073  0.61958  0.77255  0.48576  0.95510
     26   1.95730  7.23276  6.46413  6.54009  5.30654  6.01591  6.65393  7.06594  6.96740  6.35117  7.51379  2.21978  6.80686  6.93370  7.05501  5.56828  5.97019  6.49412  6.95947  0.32593     26 Y - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00090  7.01795        *  0.61958  0.77255  0.00000        *
//