Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype15.2.hmm @ 22:98bd8a0f0901 draft
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| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:01:40 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype15.2 LENG 25 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Jul 28 10:24:42 2015 NSEQ 19 EFFN 19.000000 CKSUM 4237242158 STATS LOCAL MSV -6.8027 0.73800 STATS LOCAL VITERBI -7.1293 0.73800 STATS LOCAL FORWARD -3.4672 0.73800 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.13329 6.08575 3.15489 2.95214 3.91806 3.41639 4.00028 3.00580 2.72832 2.66038 4.08381 2.52800 2.44000 3.06229 2.86246 2.08793 1.85695 3.62279 5.42264 5.38976 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.00000 * 1 3.99923 6.49087 4.19327 3.66655 5.85449 4.73782 2.35475 5.32914 2.17688 4.79174 5.53984 1.17476 5.13965 1.95392 4.03857 2.55520 1.97910 4.89442 6.90456 5.51468 1 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.09669 6.57018 2.39948 0.61958 0.77255 0.48576 0.95510 2 2.17732 5.55451 4.85544 4.29102 2.42989 4.84740 5.16498 2.84592 2.72479 3.79715 4.69347 4.66108 1.79760 4.52820 4.56581 2.20100 1.32048 3.85134 6.17485 4.95005 2 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00229 6.47577 7.19812 0.61958 0.77255 0.19023 1.75314 3 5.16716 7.98515 2.26909 1.57613 7.24136 5.21477 5.88317 6.85127 5.08231 6.26763 7.17846 1.90984 1.64391 5.06713 5.82500 4.97559 1.18971 6.34957 8.41353 6.76296 3 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 4 2.39163 6.33953 2.00019 1.29312 5.68518 4.60233 4.78866 2.59277 2.26728 4.64442 5.38032 4.06980 4.99595 2.73061 2.31417 3.79192 4.06067 4.73054 3.18266 5.36123 4 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 5 3.96627 6.32873 4.23096 2.64570 5.73743 4.71798 5.00780 5.19772 3.77634 4.72634 5.49406 4.26634 2.84180 2.36107 4.25768 1.10255 1.35235 2.86458 6.89554 5.51434 5 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 6 2.34534 6.29050 4.10025 2.31516 5.61598 4.61305 4.80313 3.16601 3.54529 4.58781 5.33809 1.18954 3.39748 3.90679 2.16788 1.96894 4.06361 4.67096 3.32596 5.33929 6 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 7 2.25935 6.20153 2.48308 3.59339 5.49382 2.63889 4.83126 3.15152 3.59281 4.48578 5.26039 2.71612 1.99136 3.94951 1.96629 3.83023 1.93985 2.54224 6.67212 5.29767 7 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 8 4.59867 6.90946 4.96682 4.31114 6.43520 5.26387 5.26730 5.81238 1.50319 5.20166 6.01127 1.67749 5.63721 4.37799 1.78579 2.25830 1.42528 5.41833 7.22269 5.99382 8 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 9 2.07116 5.38018 5.91887 5.31388 2.99775 2.52233 5.50640 3.82091 5.10947 1.95330 4.51314 5.30784 2.53727 5.24865 5.13335 4.45230 1.30798 1.83727 6.01717 4.84073 9 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04969 6.57018 3.05603 0.61958 0.77255 0.48576 0.95510 10 3.90160 5.49871 1.81332 4.43955 4.61473 4.93626 5.21326 2.35139 4.37065 1.63591 2.30171 4.77424 5.31194 2.13040 4.65907 2.94887 1.90835 3.75757 6.09680 4.88522 10 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10804 6.52267 2.29326 0.61958 0.77255 0.97368 0.47432 11 4.09417 5.71947 5.39261 4.97298 1.92389 5.01389 5.58481 4.37402 4.94623 1.78501 5.01199 2.25364 1.51498 5.16718 5.16060 1.40732 4.42075 4.14247 6.28941 4.94125 11 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.34852 6.41707 1.22884 0.61958 0.77255 1.55889 0.23619 12 3.84021 6.13691 4.20518 3.59298 5.48801 2.30264 2.09725 4.89816 2.15841 1.42822 5.20019 4.08723 4.96512 3.79539 1.81235 2.36148 4.04757 4.53669 6.52690 5.23122 12 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00343 6.07198 6.79433 0.61958 0.77255 0.81407 0.58528 13 3.88837 5.47592 5.05139 4.42628 4.60810 4.89791 5.11175 1.41923 2.75130 1.37646 4.58549 4.73017 2.15500 4.50942 2.42467 2.39990 4.11203 3.74355 6.05672 4.86029 13 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00271 6.30721 7.02956 0.61958 0.77255 0.28126 1.40580 14 3.89141 5.82992 4.45641 2.21686 5.02082 4.77313 5.02910 2.80194 3.93025 1.78434 4.93662 2.44040 5.17475 4.25716 4.35031 1.24382 1.91557 4.13277 6.39668 5.11910 14 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.52267 7.24502 0.61958 0.77255 0.26947 1.44301 15 5.44261 7.43310 6.04609 5.10774 7.19922 5.87929 5.58275 6.37325 1.36554 5.62898 6.54224 0.84897 6.19302 4.70639 1.58257 2.73932 5.50882 6.07229 7.52259 6.51538 15 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 16 4.06732 5.65112 5.22924 4.61336 4.77076 5.08832 5.31163 1.81683 1.94927 1.47567 2.37012 4.92242 5.45447 2.09970 2.91293 4.36789 2.43008 3.91468 6.23273 5.03412 16 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 17 4.52461 6.87862 4.88130 2.37033 6.34807 5.21014 2.78597 5.73574 1.40060 5.12781 5.92817 4.68144 5.56666 2.02024 1.64853 4.48365 1.59786 5.34355 7.15551 5.90809 17 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 18 4.93061 7.24231 1.82125 4.34200 7.32881 5.18728 6.16390 6.93512 5.44033 6.41988 7.30453 2.69667 5.95678 5.37736 6.14195 0.46947 2.34247 6.23470 8.55796 7.00845 18 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 19 4.89270 7.56780 2.83113 2.23466 6.91182 0.85334 5.70658 6.47493 4.76432 5.91661 6.75675 2.68607 5.76835 4.86794 5.40798 1.58110 2.42770 5.98709 8.05562 6.49386 19 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 20 1.99296 6.22889 4.42353 3.88310 5.73354 4.73976 5.10184 5.18313 2.29792 4.73421 3.27444 3.10656 5.20566 4.22935 4.32596 1.21136 1.31224 4.76389 6.91706 5.56316 20 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.09579 6.57018 2.40854 0.61958 0.77255 0.48576 0.95510 21 2.24252 5.52054 4.85389 2.32610 4.65992 4.85780 5.14346 4.01171 4.23270 2.74011 2.42137 4.65752 1.35987 4.52063 4.55634 1.67827 4.09559 2.59376 6.12311 4.90072 21 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00229 6.47667 7.19902 0.61958 0.77255 0.19128 1.74814 22 4.22743 5.57754 2.47882 5.60294 2.44624 5.43982 5.79373 0.98818 5.40252 1.44083 4.63541 5.60233 5.78442 5.53192 5.41734 2.82237 4.46152 2.49298 6.26232 5.08943 22 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00208 6.57018 7.29252 0.61958 0.77255 0.48576 0.95510 23 4.86499 6.94181 2.28245 4.84820 7.42693 5.27281 6.58379 7.04770 5.92885 6.60062 7.45877 5.28447 2.33388 5.84823 6.49214 4.94577 0.28432 6.21435 8.63706 7.31754 23 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10276 6.57018 2.34077 0.61958 0.77255 0.48576 0.95510 24 4.68355 6.92152 5.04828 4.38814 6.45927 5.30820 2.20284 5.81151 3.56253 5.19516 6.03014 4.81516 1.49509 1.36268 2.19566 4.65378 1.61961 5.44310 7.20217 6.01390 24 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00230 6.46972 7.19207 0.61958 0.77255 0.18346 1.78609 25 2.62103 5.66872 5.54584 5.02204 2.82589 5.06768 5.63202 4.24907 4.90320 2.91415 4.90069 5.19302 0.56180 2.97464 5.10249 4.41188 2.39922 4.03114 6.39263 5.19110 25 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00140 6.56950 * 0.61958 0.77255 0.00000 * //