Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype1.hmm @ 23:99cdfbd01d97 draft
Uploaded
| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:02:41 -0400 |
| parents | 36cb22bd911d |
| children |
line wrap: on
line source
HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype1.2.2 LENG 20 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Wed Jul 22 16:28:52 2015 NSEQ 114 EFFN 16.452209 CKSUM 230921126 STATS LOCAL MSV -5.8517 0.72046 STATS LOCAL VITERBI -6.4341 0.72046 STATS LOCAL FORWARD -4.6617 0.72046 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.88091 6.11899 1.92851 2.01032 4.32208 4.24438 4.23469 3.00141 2.22197 1.74415 3.66285 2.79338 5.94754 4.01342 3.28923 2.90847 3.12039 4.23041 7.20112 2.74858 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.00000 * 1 5.93723 6.99655 7.95220 7.40640 4.86765 7.56972 7.82241 1.33088 7.34704 0.37080 4.56201 7.82516 7.22539 6.87530 7.13320 7.13995 6.11087 4.32050 7.33325 6.53626 1 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 2 5.20410 6.40045 7.26145 6.71767 4.95262 6.68808 3.86455 1.61092 6.59516 0.49989 4.70186 6.86812 6.76996 6.54000 6.57154 6.09561 5.42766 2.03821 7.14826 6.12827 2 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 3 3.94875 5.37457 5.60597 5.00051 3.70192 5.07981 2.74631 2.20975 2.54657 0.71200 4.42622 5.12903 5.43794 2.44525 4.89644 4.38022 4.17880 3.30167 5.97559 4.79527 3 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 4 6.01676 7.06650 8.00115 7.44444 4.83720 7.61022 7.80836 2.46472 7.37460 0.13772 4.53420 7.88217 7.23412 6.85920 7.13012 7.19336 6.17926 4.48385 7.30237 6.51492 4 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 5 5.67846 7.51901 6.14384 5.30024 7.31430 5.96347 5.72413 6.55895 0.11455 5.78227 6.73310 5.54785 6.31329 3.02471 3.90373 5.63503 5.73089 6.27508 7.60064 6.65052 5 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 6 7.25167 7.94884 7.54932 7.62724 5.13087 6.84171 6.63694 7.31549 7.63402 6.35385 7.78266 7.32174 7.37434 7.52813 7.39184 7.25451 7.55222 7.22206 6.73125 0.01946 12 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 7 4.17392 3.92164 6.49393 6.40037 7.01002 2.07699 7.03629 6.53473 6.35021 6.21253 6.92808 1.37082 5.76856 6.44048 6.38587 0.78476 2.23462 5.54998 8.33365 7.32213 13 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 8 5.55195 7.40768 6.74065 5.24669 7.22877 5.93751 3.78766 6.32237 1.65739 5.54032 6.47768 5.42250 6.18594 2.46300 0.41401 5.50185 5.53906 6.06320 7.40319 6.45904 14 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 9 7.16725 8.23578 6.34538 0.01128 8.22901 6.57609 7.82136 8.50300 7.25900 7.64585 8.91737 6.97669 7.24263 7.37080 7.44128 7.23262 7.54954 8.08986 8.65644 8.28909 15 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 10 5.20165 7.08831 5.90496 5.44146 7.26795 5.64748 6.06550 6.71473 0.09544 6.03454 6.95572 5.64690 6.24295 5.23872 4.36756 3.33270 5.54767 6.20136 7.84467 6.86209 16 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 11 5.27929 8.21183 0.48492 1.23336 7.43053 3.14961 5.92268 7.10844 5.27751 6.49177 7.50478 4.59903 5.91288 5.13001 6.15545 5.04100 5.63192 6.57580 8.62971 6.89240 17 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 12 5.26103 8.22927 0.23963 2.26255 7.40682 5.14601 3.22377 7.08206 5.24331 6.46593 7.47581 3.68545 5.89310 5.10101 6.11790 5.01893 5.61003 6.55413 8.61740 6.86382 18 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 13 5.23591 8.17310 3.12242 0.20363 7.37604 3.88269 5.88220 7.03796 5.20405 6.42617 7.42130 4.57210 5.88354 2.61367 6.04859 5.00165 5.58172 6.51328 8.57556 6.84123 19 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 14 2.59452 6.02323 6.30037 6.10527 1.72193 4.90099 6.71524 5.79134 6.05620 5.50800 6.33361 3.87144 5.73330 6.18281 6.13340 2.36282 0.52703 5.17514 7.74994 6.61688 20 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 15 1.51401 6.11373 3.28801 3.75781 5.48360 4.65924 3.13623 4.93584 3.81389 4.52058 5.32267 4.26675 5.11884 4.14807 4.28424 1.03701 2.49917 4.56640 6.73093 2.14411 21 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 16 5.11083 7.75657 3.94307 1.64973 7.32189 5.12958 5.93024 6.97917 5.21592 6.39379 7.35923 0.40114 5.87927 5.13700 5.98413 2.57227 5.49488 6.39587 8.52132 6.85226 22 N - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 17 5.97069 7.02550 7.97481 7.42279 4.85320 7.59149 7.81801 1.70149 7.35971 0.25771 4.54809 7.85136 7.22944 6.86747 7.13218 7.16505 6.13919 4.38670 7.31962 6.52901 23 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 18 5.39389 8.23124 0.27878 1.64388 7.50086 5.26098 6.03124 7.20969 5.38984 6.58320 7.60884 4.71401 6.00728 5.24483 6.25161 5.15819 5.74655 6.68226 8.63635 6.98785 24 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 19 5.23855 8.19119 0.45887 3.21780 7.37942 3.42800 2.63271 7.04400 5.21460 6.43203 7.42938 1.69056 5.88233 5.08477 6.07536 5.00163 5.58445 6.51922 8.58516 6.84249 25 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00239 6.43270 7.15504 0.61958 0.77255 0.48576 0.95510 20 3.84478 5.18293 5.68628 5.11650 4.30926 4.97779 5.29104 2.02643 3.24881 3.42036 0.80789 5.11944 5.32202 5.05156 4.93798 4.31048 3.17489 3.02349 5.75701 1.84728 26 m - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00161 6.43192 * 0.61958 0.77255 0.00000 * //