Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype14.4.hmm @ 23:99cdfbd01d97 draft
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| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:02:41 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype14.4 LENG 23 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Jul 28 15:21:50 2015 NSEQ 91 EFFN 91.000000 CKSUM 1829739437 STATS LOCAL MSV -6.5070 0.72748 STATS LOCAL VITERBI -7.1393 0.72748 STATS LOCAL FORWARD -3.5442 0.72748 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.81642 2.29817 2.87787 2.84232 5.21343 1.73650 3.31688 4.64076 2.86406 2.42860 4.82927 2.63024 4.04170 3.21529 3.02541 2.62503 3.19709 3.61796 4.43421 4.25618 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00045 8.10272 8.82506 0.61958 0.77255 0.00000 * 1 7.92646 8.91303 9.59873 9.18458 3.48995 9.08711 9.05082 6.02523 9.13733 0.03949 6.38238 9.44932 8.92214 8.61278 8.85014 8.95628 8.07974 6.52242 8.76318 7.59483 1 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00045 8.10272 8.82506 0.61958 0.77255 0.48576 0.95510 2 9.48546 0.00113 9.50220 9.59526 10.13392 8.54747 10.10594 10.57141 9.78463 9.59683 10.96754 9.92576 9.18472 10.09805 9.51719 9.90243 9.88813 10.19884 10.39286 10.38464 2 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00045 8.10272 8.82506 0.61958 0.77255 0.48576 0.95510 3 8.91575 9.81926 9.30469 9.39565 9.94112 0.02612 3.70657 10.38755 9.64278 9.49497 10.78123 9.63556 9.08426 9.91350 9.43099 9.22261 9.39636 9.87525 10.35089 10.13926 3 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00045 8.10272 8.82506 0.61958 0.77255 0.48576 0.95510 4 5.82240 7.43966 6.96891 6.22655 6.60836 6.75526 6.82196 3.22187 1.25880 3.20089 3.45934 4.27852 7.10082 2.36654 1.13560 6.07626 3.36673 2.07237 7.96151 6.79067 4 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02586 8.10272 3.67986 0.61958 0.77255 0.48576 0.95510 5 2.92763 7.66112 4.08423 2.33285 7.00735 3.20323 4.23060 6.49453 3.75962 5.96702 6.70195 2.08461 4.02029 5.20240 5.33552 0.67689 2.74561 3.86869 8.09318 6.68080 5 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00046 8.07732 8.79966 0.61958 0.77255 1.43126 0.27313 6 0.96450 7.69258 5.43833 3.35968 7.04438 1.49091 3.55874 6.52632 2.26842 5.99560 6.73391 5.42411 3.50456 3.87688 2.23323 4.29024 5.41674 3.37778 8.11690 6.71415 6 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05781 8.07732 2.88487 0.61958 0.77255 1.43126 0.27313 7 1.96312 7.59521 2.26576 2.50800 6.94170 2.54482 6.04142 6.42867 2.24280 5.90110 6.63551 2.27554 4.53262 2.64373 2.77685 3.27577 1.75380 3.87052 8.02705 6.61525 7 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00049 8.01999 8.74234 0.61958 0.77255 1.00534 0.45558 8 6.49258 9.17957 0.81080 1.12005 8.49572 6.65275 3.76227 8.02990 2.73032 4.20946 8.30619 2.59241 7.29180 6.33791 3.19095 6.33168 6.77317 7.56930 9.52636 8.01773 8 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00048 8.04687 8.76922 0.61958 0.77255 1.96940 0.15029 9 7.68676 8.70328 9.47990 9.00953 3.25414 9.11047 8.54052 5.81139 8.91141 0.32037 3.43425 9.10399 8.78727 8.35546 8.63259 3.56516 7.83492 6.29821 1.79058 6.97848 9 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02702 8.04687 3.63685 0.61958 0.77255 1.96940 0.15029 10 3.03060 7.65546 5.79804 5.22483 7.08031 0.41610 6.38364 6.51207 3.21030 3.73495 6.83300 2.74979 6.57312 5.50870 3.28345 3.48769 2.90165 6.12276 4.00164 6.87966 10 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.10129 8.02034 2.34344 0.61958 0.77255 2.27131 0.10890 11 2.77140 0.17126 8.37421 8.42251 8.61897 2.95629 8.73074 8.16505 8.13687 7.84935 8.55346 7.40198 7.30008 8.21012 3.38772 5.91851 6.30145 7.10991 9.92356 8.99766 11 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03473 7.91960 3.38825 0.61958 0.77255 2.92831 0.05497 12 3.84992 7.46974 2.51633 1.40010 6.81616 1.73835 5.91611 6.30309 2.31309 5.77560 3.28562 5.19616 3.06894 3.05688 3.08776 3.06573 2.46025 2.96922 7.90161 6.48984 12 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00683 7.88543 5.04673 0.61958 0.77255 3.07035 0.04752 13 2.14284 7.46394 3.72523 2.15926 6.81039 2.65267 2.96005 6.29734 2.05358 4.39033 4.44773 1.97151 6.11683 2.10829 3.67768 2.87996 2.91558 3.02163 7.89580 4.05102 13 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01179 7.87916 4.47897 0.61958 0.77255 2.67985 0.07104 14 3.07099 3.07840 1.72938 4.64562 6.81490 1.56426 2.92413 6.30146 2.36625 5.77484 6.51027 2.62026 6.12222 2.30530 5.14507 4.91835 3.17205 5.86031 7.90166 2.09312 14 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00057 7.87427 8.59662 0.61958 0.77255 3.11173 0.04555 15 2.11307 7.45945 5.19312 2.54810 6.80589 2.29664 5.90579 6.29282 3.50272 5.76531 6.49975 1.88054 3.74341 1.58542 2.57797 1.93870 3.94662 4.47073 7.89131 3.82819 15 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00691 7.87427 5.03558 0.61958 0.77255 3.11173 0.04555 16 2.47047 7.45351 3.36381 3.12326 6.79995 1.42535 2.80205 3.26031 2.86461 5.75938 3.90498 3.65113 3.05274 3.02072 2.08748 3.15096 2.29605 5.84488 3.83976 6.47361 16 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.08652 7.86794 2.49490 0.61958 0.77255 2.72029 0.06812 17 4.87261 7.38703 2.41631 3.63262 6.73337 2.50100 3.32319 6.22049 2.25258 5.69286 6.42748 1.44259 2.53105 2.21736 5.06057 1.96447 3.13956 5.77837 7.81884 3.62912 17 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00062 7.78894 8.51128 0.61958 0.77255 1.95660 0.15238 18 3.59975 7.49063 3.19494 2.62207 6.83616 0.83629 2.59265 6.32497 4.67045 5.79667 6.53364 3.81709 3.98074 5.02480 2.49371 2.57382 2.09637 5.88202 7.92299 6.50722 18 g - - - 2.69262 4.43221 2.78281 2.73883 3.46122 2.38030 3.70619 3.30350 2.67675 2.69985 4.25685 2.89659 2.74735 3.19142 2.90518 2.37412 2.77836 2.99514 4.51548 3.60731 0.81794 0.69791 2.79628 1.05543 0.42778 0.22262 1.61155 19 3.03655 0.70561 2.34052 2.78325 6.91289 2.81942 3.89078 6.38919 4.81852 5.88238 6.62915 2.88618 6.27422 5.17581 5.31009 2.50345 4.02248 3.76847 8.02544 4.28639 23 c - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.12291 8.00728 2.16002 0.61958 0.77255 1.15114 0.38020 20 3.50400 7.44322 2.94812 3.58107 6.76491 2.81004 1.02737 6.23474 4.70702 2.66177 3.56270 4.19058 2.53669 5.06684 3.22374 1.84527 5.22112 2.90178 7.89018 6.49373 24 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00054 7.91436 8.63671 0.61958 0.77255 0.03322 3.42108 21 3.83963 7.67251 3.52617 3.74939 7.01889 1.45576 2.93070 6.50579 2.39119 3.12955 6.71283 1.99036 6.32559 3.50688 3.18291 1.94623 3.78621 3.66494 8.10441 2.31925 25 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.03854 8.10272 3.28339 0.61958 0.77255 0.48576 0.95510 22 2.89749 7.63670 2.68705 2.95601 6.98305 1.62376 2.91907 2.59740 3.72806 5.94253 6.67703 1.63674 6.28988 3.06481 3.42684 2.70430 3.53463 2.33838 8.06863 6.65691 26 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.04702 8.06465 3.08740 0.61958 0.77255 1.69307 0.20329 23 2.35641 7.59383 3.43264 2.96958 6.94005 1.46437 3.57287 6.42687 4.04413 5.89960 6.63420 1.32919 6.24707 3.25020 5.26797 2.78150 2.77502 3.05493 2.91254 6.61410 27 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00033 8.01795 * 0.61958 0.77255 0.00000 * //