Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype3.hmm @ 23:99cdfbd01d97 draft
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| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:02:41 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype3.3 LENG 32 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 23 10:09:15 2015 NSEQ 44 EFFN 3.510010 CKSUM 2184309054 STATS LOCAL MSV -7.1350 0.71979 STATS LOCAL VITERBI -7.5438 0.71979 STATS LOCAL FORWARD -4.6028 0.71979 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.73884 3.39915 3.50821 2.37133 4.17037 2.54244 3.37951 2.93276 3.27548 1.87451 4.20435 2.60203 2.89091 3.48600 3.84881 3.11395 2.98846 2.89114 5.77974 2.88095 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.00000 * 1 3.21372 5.51608 3.10076 2.86964 5.02936 2.34894 2.96024 4.53494 3.13851 4.06859 4.87384 2.02743 1.09600 3.44283 3.61574 3.20792 3.52323 4.09429 6.22050 4.82229 1 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 2 2.95349 4.38801 4.58100 3.98608 3.18379 4.08305 4.39763 1.92823 3.83421 1.31381 3.48851 4.12699 2.93394 4.02948 2.58018 3.16658 3.18565 2.35721 5.00537 3.82136 2 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 3 2.07935 4.49260 4.34534 3.77918 3.65573 2.86370 4.40678 2.13045 3.67737 2.07554 3.65146 4.00956 4.42305 3.91885 3.89613 3.30935 1.42996 2.70959 5.16428 3.96773 3 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 4 3.06094 4.99435 4.40342 4.33242 5.52131 3.72393 5.41478 5.09490 4.52460 4.74819 5.55040 4.30495 0.58729 4.75273 4.73557 1.48142 3.61981 4.30343 6.81668 5.67261 4 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 5 2.99313 5.03140 3.75399 3.48327 5.13627 3.67812 4.72794 4.60027 3.64096 4.21776 5.01339 1.63782 4.38459 3.93321 4.03523 2.04899 0.93384 4.02121 6.40394 5.12745 5 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 6 2.95238 4.81362 4.54596 4.27883 4.85460 3.70662 5.14568 4.07183 4.25632 3.93575 4.83178 4.24025 0.68577 4.51869 4.46970 2.41530 3.45528 1.90356 6.29405 5.11052 6 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 7 3.24273 5.66306 3.35218 2.60635 5.06016 3.90848 4.03892 4.49589 1.36833 3.93697 4.72179 3.37982 2.32842 1.49285 2.92774 3.19783 3.45543 4.08873 6.01907 4.69224 7 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 8 2.94313 4.78664 3.63549 3.08491 3.93731 3.86371 3.32972 2.90578 3.03766 2.03076 3.88709 1.47741 4.25385 3.37442 3.42390 3.10500 2.17159 3.06862 5.34763 4.08396 8 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 9 4.15892 5.33317 6.17232 5.67976 3.90924 5.70538 6.20634 0.63963 5.56451 1.32029 3.64746 5.88571 5.76551 5.55786 5.58555 5.16532 4.39344 2.46790 6.18779 5.14937 9 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 10 4.53314 0.07855 5.96817 5.98928 6.01297 4.78256 6.45659 5.61170 5.94343 5.31824 6.49984 5.82992 5.52417 6.23148 5.82992 4.79756 5.07583 5.21088 6.95950 6.25369 22 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 11 3.86857 5.07786 5.96569 5.56149 4.48567 5.44725 6.40811 1.94447 5.50379 2.87412 4.21020 5.69696 5.72580 5.79983 5.68641 4.93164 4.15244 0.37222 6.68865 5.43096 23 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 12 3.49989 5.92268 2.46855 2.83322 5.52601 3.82386 4.50989 5.08636 3.56228 4.58102 5.42358 0.68839 4.49165 3.68612 4.15779 1.93066 3.85155 4.57254 6.71958 5.21751 24 N - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 13 5.20019 6.22578 5.69063 5.68686 3.18086 5.29374 4.71975 5.14664 5.56367 4.29755 5.69297 5.36968 5.77779 5.55035 5.47305 5.18822 5.50554 5.06856 4.83065 0.14633 25 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 14 3.05826 5.59487 2.44383 2.05543 4.93336 3.72411 3.64580 4.42738 1.75685 3.89510 4.64511 1.53171 4.16915 2.59476 3.25887 3.00287 3.29717 3.98351 6.02150 4.59305 26 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 15 4.11842 5.62701 4.77719 4.30766 2.85138 4.83007 0.92818 4.25512 3.83887 3.22231 4.78043 4.42834 5.16975 4.29197 3.40447 4.17372 4.32567 4.08937 4.49709 1.23023 27 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 16 1.12538 4.70404 4.65467 4.22948 4.48881 3.73538 4.96644 3.67454 4.14838 3.55344 4.45163 4.21193 4.44624 4.38284 4.36445 2.87313 1.38374 1.90425 5.95507 4.78054 28 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 17 4.51749 5.67873 6.35676 5.84532 3.65415 5.90326 6.18785 2.57579 5.65421 0.27595 3.40141 6.11432 5.83306 5.47076 5.56798 5.40246 4.72209 3.14569 5.99524 5.03594 29 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 18 2.60384 5.40072 3.16162 1.72804 4.74088 3.68312 3.86893 4.22021 1.75761 3.70232 4.44421 3.15366 4.07697 2.78577 2.83248 1.94314 2.92162 3.47153 5.83532 4.43170 30 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 19 3.49924 5.78333 3.33248 3.03852 4.91403 4.01881 1.60363 4.65312 2.82292 4.11079 4.96211 0.97999 4.51087 3.41726 2.74532 3.46053 3.73765 4.27607 6.05365 4.66153 31 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 20 4.60614 6.12973 5.45708 5.51284 6.40383 0.06686 6.40384 6.40744 5.80569 5.82517 6.89882 5.62715 5.51718 6.04799 5.79770 4.82581 5.14893 5.74207 7.08390 6.58138 32 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 21 4.60614 6.12973 5.45708 5.51284 6.40383 0.06686 6.40384 6.40744 5.80569 5.82517 6.89882 5.62715 5.51718 6.04799 5.79770 4.82581 5.14893 5.74207 7.08390 6.58138 33 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 22 4.75922 5.93912 6.05293 5.80360 4.05205 5.46802 6.17524 3.38303 5.62665 0.16814 3.89573 6.02414 5.78979 5.67078 5.57047 5.40799 5.02928 3.68779 6.18699 5.15204 45 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 23 4.64505 6.54053 3.75901 0.13720 6.16184 4.56613 5.43426 5.96965 4.55134 5.39305 6.47108 4.37032 5.24864 4.72528 4.98679 4.57860 5.00125 5.56579 7.01808 6.01053 46 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 24 3.06266 4.97043 2.79227 2.06808 4.06078 3.91192 4.18246 3.40164 3.10690 1.09420 2.97017 3.52831 4.32217 3.41956 3.52259 3.19134 3.29826 3.20220 5.51559 4.24807 47 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 25 4.32051 5.54729 5.71864 5.33995 3.11993 5.31535 4.81768 3.31076 5.08371 0.47933 3.82297 5.23322 5.53109 5.08417 5.06408 4.74388 4.53933 3.50383 4.93387 1.86210 48 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 26 3.74645 6.29450 2.88679 0.50383 5.61760 3.95893 4.48638 5.18004 3.37653 4.61561 5.50002 3.43225 4.58866 2.26978 3.85443 3.61704 4.03304 4.74493 6.69869 5.23635 49 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 27 3.34510 5.61601 2.21603 2.90052 3.95378 3.94387 1.70229 4.33232 3.11495 3.83006 4.71128 3.43070 4.42070 2.88782 3.58498 3.31066 3.58923 3.99760 5.43695 1.29689 50 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 28 3.65971 6.38197 1.79071 1.72482 5.65962 2.57468 4.43296 5.22655 3.50886 4.66576 5.51783 0.99698 4.50080 3.59760 4.16492 3.50690 3.95547 4.75000 6.80774 5.23248 51 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 29 0.27511 4.85309 4.91488 4.83618 5.45726 3.66104 5.61094 4.70867 4.82496 4.56003 5.41753 4.45035 4.51761 5.01442 4.91149 3.17044 2.96757 4.03707 6.84349 5.76436 52 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 30 3.50178 5.11233 4.25552 1.47825 3.83893 4.48369 4.77075 2.57314 3.76333 0.95116 3.67956 4.23074 4.82981 4.07627 4.06951 3.80714 3.73443 2.95766 5.66221 4.49181 53 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 31 3.27139 5.37201 3.31581 1.73601 4.47785 3.95193 4.21917 3.87171 2.97356 1.10648 4.34659 3.49321 4.40436 2.30003 3.35428 3.31017 3.50667 3.65075 5.83661 4.53204 54 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00955 5.05179 5.77414 0.61958 0.77255 0.48576 0.95510 32 4.36471 5.52561 6.35019 5.77678 3.66428 5.84380 6.13710 1.35315 5.65782 0.65511 2.56031 6.02263 5.76245 5.42901 5.55864 5.27102 4.56019 2.97368 5.98601 5.09005 55 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00644 5.04868 * 0.61958 0.77255 0.00000 * //