Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype4c.hmm @ 23:99cdfbd01d97 draft
Uploaded
| author | johnheap |
|---|---|
| date | Tue, 04 Jun 2019 18:02:41 -0400 |
| parents | 36cb22bd911d |
| children |
line wrap: on
line source
HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype4.D LENG 33 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 23 11:27:39 2015 NSEQ 5 EFFN 2.866211 CKSUM 1725598554 STATS LOCAL MSV -6.9198 0.71973 STATS LOCAL VITERBI -7.1784 0.71973 STATS LOCAL FORWARD -4.3724 0.71973 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.98900 5.22413 2.89804 2.05150 3.56154 2.81632 3.98547 2.84234 3.27419 2.48715 4.58630 3.77581 3.96738 3.30865 2.68590 2.55192 2.81129 3.07995 5.80989 3.11799 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.00000 * 1 3.09843 5.47377 3.35091 2.79084 4.84961 2.27201 2.19707 4.28685 2.46249 3.75126 4.53800 3.29799 4.20434 1.75434 1.85073 3.06936 3.31027 3.89423 5.84683 4.52751 1 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 2 1.92353 4.58261 4.97352 4.42618 3.85854 4.42424 4.93209 1.41050 4.30318 2.70580 3.77281 4.55156 4.80712 4.51855 4.44736 3.76907 2.08110 1.46670 5.52028 4.32260 2 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 3 3.06977 5.02121 3.52494 3.03935 4.08554 3.87069 1.53692 3.59201 2.82329 3.24488 4.14142 3.49531 4.28988 2.10510 3.15436 3.17038 3.30646 1.78754 5.45367 4.11687 3 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 4 2.89354 4.90075 3.35960 1.78531 4.01932 3.74513 3.97154 3.48084 2.84602 2.08866 3.99140 3.33628 4.14581 3.18704 3.27413 1.99977 3.12817 3.20789 5.38946 2.42651 4 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 5 1.77224 4.66287 4.09918 3.62953 4.40691 3.59373 4.58183 3.74941 3.59591 3.48434 4.34476 3.83587 1.94211 3.88179 3.92388 1.52539 3.20701 1.85481 5.81014 4.59541 5 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 6 1.56329 5.10017 1.95949 2.96519 4.83430 3.61746 4.30671 4.24204 3.20179 3.86858 4.68013 3.42855 4.22373 3.47810 3.67132 3.02140 1.29880 3.79177 6.08891 4.74889 6 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 7 1.67335 4.74876 4.14197 3.77981 5.10806 1.72053 4.85035 4.57674 3.81614 4.21004 4.98060 3.90140 1.86702 4.08511 4.15669 1.40546 3.26799 3.89799 6.39554 5.18959 7 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 8 1.98882 5.34081 3.17048 2.66927 4.72671 2.16634 3.90820 4.18132 1.90049 3.68412 4.45521 3.19707 4.10777 1.80569 3.02811 2.93195 3.19157 3.77147 5.82705 4.45969 8 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 9 1.21123 5.18415 3.17175 1.75627 4.84802 3.62699 4.20953 4.29806 3.06062 3.86991 4.66595 3.35356 4.19928 3.36333 3.53272 1.84104 3.30746 3.84283 6.06011 4.70052 9 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 10 4.31749 5.88681 5.16030 5.20248 6.14026 0.09017 6.13775 6.08730 5.49215 5.54531 6.59929 5.32894 5.28124 5.74162 5.52167 4.53017 4.85793 5.43587 6.87671 6.30661 10 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 11 1.98163 4.91248 3.37904 2.84427 4.13800 3.71416 3.97720 3.55289 2.81365 3.19786 4.04355 3.33009 4.12908 1.87754 3.23912 2.95459 2.03890 3.26040 5.47061 2.43545 11 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 12 1.78102 4.60062 4.32377 3.84007 3.98536 3.81104 4.60681 3.12273 3.74146 1.75058 3.93806 4.01689 4.38934 4.02157 3.98941 3.19092 1.22120 2.89952 5.52028 4.32599 12 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 13 0.21149 5.05512 4.85209 4.80413 5.42187 3.83817 5.63887 4.76049 4.85690 4.56584 5.53267 4.59354 4.66500 5.09180 4.94722 3.42844 3.77383 4.18551 6.69316 5.68547 13 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 14 4.51949 5.73241 5.81532 5.54632 3.87794 5.27308 5.93890 3.19246 5.34861 0.21109 3.73349 5.76284 5.59930 5.43809 5.32372 5.14187 4.79178 3.46770 5.99848 4.93209 14 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 15 3.06687 5.40901 1.95294 2.66498 4.78050 1.81777 4.07737 4.22749 2.94602 3.79169 4.59648 1.96301 4.18818 3.22324 3.45753 3.04839 3.34005 2.05938 5.99031 4.59152 15 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 16 3.18558 5.22082 3.92705 3.44252 5.06191 3.84382 4.38542 4.53383 2.83604 4.05067 4.89499 3.77402 4.42914 3.55536 1.22736 1.03619 3.54470 4.06621 6.10815 4.89380 16 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 17 5.01334 5.89800 5.78350 5.76288 0.52012 5.43744 4.04710 4.53709 5.53576 3.64710 5.04903 4.96325 5.68937 5.14863 5.30668 4.86280 5.20539 4.51353 4.11635 1.34951 17 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 18 4.51949 5.73241 5.81532 5.54632 3.87794 5.27308 5.93890 3.19246 5.34861 0.21109 3.73349 5.76284 5.59930 5.43809 5.32372 5.14187 4.79178 3.46770 5.99848 4.93209 18 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 19 1.50504 4.69593 4.61022 4.40019 5.09219 3.52522 5.24150 4.33442 4.36758 4.17353 5.03428 4.20029 4.34730 4.60357 4.54047 3.01331 0.63353 3.75656 6.48652 5.35995 19 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 20 0.21149 5.05512 4.85209 4.80413 5.42187 3.83817 5.63887 4.76049 4.85690 4.56584 5.53267 4.59354 4.66500 5.09180 4.94722 3.42844 3.77383 4.18551 6.69316 5.68547 20 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 21 3.98411 5.17443 5.96619 5.47087 3.80560 5.50075 5.99602 0.68242 5.34423 1.36193 3.55506 5.66686 5.59738 5.38125 5.38538 4.94693 4.22140 2.32432 6.04480 4.98010 21 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 22 1.52611 4.70426 4.53424 4.37319 5.30217 3.48485 5.28590 4.75780 4.42737 4.46706 5.25110 4.17262 4.32483 4.62888 4.60999 0.57183 3.33770 3.98568 6.64244 5.52011 22 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 23 4.00472 5.97435 4.75429 3.71240 5.67109 4.46999 4.15981 4.88079 1.24690 4.16261 5.07562 3.98051 4.76910 3.28543 0.73514 3.96923 4.06882 4.58943 6.06576 5.05138 23 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 24 4.45228 6.40922 0.16293 3.53548 6.01339 4.34096 5.26433 5.91373 4.57617 5.33586 6.42428 4.11214 5.04915 4.56558 5.14279 4.36495 4.83186 5.46753 6.90857 5.84627 24 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 25 3.44089 6.11110 1.72375 0.99648 5.39977 3.72807 4.24306 4.94533 3.23818 4.39334 5.21893 3.17096 4.33793 1.86812 3.84173 3.31040 3.72142 4.48175 6.52986 4.99712 25 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 26 4.56785 6.12040 5.17002 4.58972 5.77012 4.71032 5.10255 5.49963 3.35010 4.82307 5.86873 4.83978 5.23283 4.34546 0.16410 4.65856 4.81066 5.18955 6.47750 5.58844 50 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 27 0.56599 4.69276 4.58997 4.42861 5.27805 3.48349 5.30517 4.72178 4.46613 4.44017 5.22857 4.19158 4.32509 4.66052 4.63352 1.53674 3.33337 3.96400 6.62751 5.51204 51 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 28 3.31564 5.34801 3.23759 0.78885 4.68033 3.91347 4.43020 3.55287 3.31128 3.57065 4.58736 3.56030 4.46873 3.62990 3.74203 3.39015 3.61523 1.83882 6.08470 4.74417 52 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 29 4.34866 6.31932 3.50251 0.18674 5.88811 4.33435 5.15293 5.62960 4.22756 5.08672 6.13801 4.09659 5.00932 4.42423 4.66916 4.28162 4.69585 5.23629 6.80236 5.72572 53 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 30 3.99112 5.24752 5.64553 5.37414 4.31829 5.09404 6.02861 0.32071 5.25293 2.78609 4.18510 5.51618 5.51900 5.54947 5.35507 4.79532 4.30180 2.38279 6.33177 5.12418 54 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 31 4.93728 6.01646 5.44682 5.41567 2.99380 5.09948 4.52571 4.87812 5.28075 4.06162 5.44203 5.14110 5.58011 5.30736 5.22341 4.94137 5.24136 4.79645 4.64589 0.18622 55 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 32 4.34866 6.31932 3.50251 0.18674 5.88811 4.33435 5.15293 5.62960 4.22756 5.08672 6.13801 4.09659 5.00932 4.42423 4.66916 4.28162 4.69585 5.23629 6.80236 5.72572 56 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01122 4.89143 5.61378 0.61958 0.77255 0.48576 0.95510 33 4.34866 6.31932 3.50251 0.18674 5.88811 4.33435 5.15293 5.62960 4.22756 5.08672 6.13801 4.09659 5.00932 4.42423 4.66916 4.28162 4.69585 5.23629 6.80236 5.72572 57 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00757 4.88778 * 0.61958 0.77255 0.00000 * //