Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype4b.hmm @ 9:a0d5e1f5bec0 draft
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| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:09:49 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype4.C LENG 33 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 23 12:04:52 2015 NSEQ 7 EFFN 4.344238 CKSUM 1872572733 STATS LOCAL MSV -7.0059 0.71975 STATS LOCAL VITERBI -7.1995 0.71975 STATS LOCAL FORWARD -4.3356 0.71975 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.83923 5.35114 3.35093 1.97049 3.01464 2.87254 3.98166 3.10722 3.21882 2.92817 4.32586 3.34457 3.55725 3.53112 2.92952 2.77914 2.68312 2.72196 4.83849 3.33635 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.18873 5.22742 1.79203 0.61958 0.77255 0.00000 * 1 4.18351 5.66422 5.10512 4.62597 0.65132 4.81577 4.52829 4.20260 3.85300 3.53516 4.76515 4.69758 5.24450 4.48849 1.43325 4.33448 4.44066 4.10565 4.91891 3.25772 1 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00958 5.04827 5.77062 0.61958 0.77255 0.94356 0.49305 2 3.92542 5.79774 4.56282 4.10659 5.62113 4.39965 4.89782 5.16012 3.23913 4.59919 5.52465 4.40422 0.64557 4.09831 1.31636 4.01987 4.25935 4.74064 6.48408 5.44010 2 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00958 5.04827 5.77062 0.61958 0.77255 0.94356 0.49305 3 3.11307 5.27097 3.57148 3.13821 4.98557 1.66847 4.30623 4.41104 1.50880 3.96040 4.76489 3.57998 4.35332 3.45495 3.30369 3.16884 1.47507 3.96356 6.11213 4.81981 3 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00958 5.04827 5.77062 0.61958 0.77255 0.27897 1.41289 4 3.11492 5.13580 4.01236 3.75490 5.36838 3.80233 4.97831 4.84317 3.91489 4.46186 5.24768 1.88411 4.53797 4.19387 4.29282 1.54303 0.90674 4.20973 6.63741 5.38063 4 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 5 1.79188 5.14772 3.92849 3.44775 5.13172 1.72315 4.60300 4.58904 3.38742 4.16428 4.93805 3.80925 4.42182 3.76378 1.73642 1.49569 3.45485 4.04367 6.33500 5.04587 5 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 6 3.18889 4.90602 4.55108 4.11865 4.26793 4.05342 4.90087 3.52319 3.99859 1.60487 4.22391 4.28609 1.63890 4.30736 4.23336 3.45716 1.18470 3.31365 5.82583 4.63285 6 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 7 2.18951 4.59930 4.74879 4.18402 3.79759 4.20829 4.67989 1.84598 4.05651 2.83380 3.78767 4.32129 4.63713 4.26584 4.21181 1.84243 2.32941 1.50215 5.33693 4.14769 7 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 8 0.57946 4.97465 5.15573 5.02919 5.59117 3.79155 5.74776 4.90594 4.98076 4.71578 5.53651 4.59760 4.64677 5.15179 5.06713 3.29139 1.28638 4.19885 6.96853 5.89627 8 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 9 4.00217 6.81154 0.82534 1.45738 6.07467 1.88200 4.71446 5.68908 3.92974 5.10737 6.02936 3.47219 4.73792 3.90232 4.68052 3.80822 4.32814 5.18756 7.25011 5.59914 9 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 10 1.68875 5.16435 4.03422 3.93961 5.65133 0.85462 5.25202 5.15520 4.32432 4.78183 5.56061 1.61352 4.61191 4.50678 4.67916 3.32408 3.69416 4.39580 6.93096 5.70711 10 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 11 3.80438 5.10457 5.67317 5.11535 1.88208 4.98532 4.98241 3.08009 4.91949 1.11739 3.64465 5.07547 5.23786 4.91381 4.88497 4.32281 4.02378 2.09267 1.67892 3.80847 11 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 12 1.61315 5.68328 3.84128 3.25741 5.19958 4.13635 4.26079 4.59342 2.68284 4.05624 4.87837 3.70863 4.55532 1.25218 1.62797 3.45799 3.68301 4.21178 6.13675 4.89136 12 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 13 0.12479 5.45933 5.39556 5.40319 5.95450 4.23084 6.15497 5.40219 5.46512 5.15692 6.10067 5.07571 5.06893 5.65789 5.48644 3.84707 4.20468 4.73084 7.13890 6.22788 13 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 14 1.59310 5.04138 5.54030 5.27804 4.82786 4.39349 5.93158 2.81782 5.18672 3.46653 4.65095 5.04395 5.09861 5.40746 5.28747 3.88100 3.89559 0.53872 6.65071 5.45995 14 V - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 15 1.15941 4.93535 4.19958 3.81338 4.42285 4.00422 4.78716 1.69833 3.82549 3.43105 4.37808 1.63230 4.59769 4.12347 4.13983 3.39714 3.52618 3.19056 5.90419 4.67128 15 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 16 4.10059 6.91566 1.42856 0.54240 6.16876 4.07514 4.78496 5.81178 4.03918 5.22163 6.17642 3.51927 4.79445 3.98179 4.81247 3.89302 4.43414 5.30821 7.33406 5.68641 16 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 17 1.55075 5.31234 5.35051 5.15067 0.54502 4.41280 5.04148 4.01644 5.07391 3.53880 4.76338 4.89315 5.09966 5.16111 5.11340 3.91180 4.11400 3.83385 5.34748 3.72633 17 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 18 4.14893 6.06273 3.78156 0.53761 1.58660 4.52715 4.82799 4.65843 4.14692 4.07715 5.23947 4.18742 5.10400 4.36379 4.55948 4.15633 4.44773 4.47534 5.67760 4.05490 18 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 19 1.59521 4.88516 3.92430 3.42006 4.23052 3.91550 4.42751 3.57098 3.39538 1.78040 4.17353 1.85920 4.41691 3.71144 3.76306 3.22812 1.98679 3.29663 5.64700 4.40303 19 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 20 1.05921 5.70781 3.16821 1.80782 5.07802 3.92684 1.86449 4.57112 3.16399 4.10742 4.92068 3.46809 4.45622 3.48784 3.63493 3.33715 3.63969 4.17003 6.26559 4.86486 20 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 21 1.75762 4.95402 5.71114 5.17387 4.16374 5.09602 5.59819 1.32377 5.04374 1.55403 4.00149 5.25310 5.37914 5.21652 5.12272 4.46334 3.93489 1.50906 6.00670 4.82809 21 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 22 3.32379 5.12979 4.75951 4.50954 4.58300 4.07172 5.28788 4.02921 4.40960 1.56543 4.71741 4.53061 4.80157 4.73095 4.59851 0.56965 3.79992 3.78095 6.19458 4.89677 22 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 23 1.75184 5.23758 3.90299 3.33238 4.57329 4.05986 4.32426 3.89206 1.21953 3.52625 1.76167 3.75676 4.49991 3.51487 3.23495 3.36455 3.51913 3.61607 5.84717 4.60357 23 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 24 3.24230 5.36590 3.60963 3.39060 5.40496 1.14820 4.73783 4.90429 3.58735 4.45707 5.24768 3.80559 4.53887 1.53598 3.99945 1.60390 3.66351 4.31684 6.59491 5.27149 24 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 25 1.68289 5.22865 3.65438 3.15546 4.92019 2.05318 4.34961 4.36141 1.70903 3.93144 4.71607 3.60436 4.34992 3.49441 3.53769 3.12153 1.63371 3.90846 6.11736 4.79481 25 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 26 4.33591 6.23454 4.90108 4.07814 5.41277 4.75352 1.50947 5.21492 2.70112 4.51099 5.45330 4.35540 5.11473 3.73557 0.58823 4.32054 4.44635 4.92130 6.24833 5.05486 50 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 27 0.12479 5.45933 5.39556 5.40319 5.95450 4.23084 6.15497 5.40219 5.46512 5.15692 6.10067 5.07571 5.06893 5.65789 5.48644 3.84707 4.20468 4.73084 7.13890 6.22788 51 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 28 3.72412 5.73683 3.48927 0.54183 5.12863 4.22712 4.86095 3.90549 3.79220 4.00057 5.06559 3.90768 4.83689 4.07554 4.22767 3.79713 4.05329 1.84155 6.54936 5.20452 52 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 29 4.97577 6.77802 4.05890 0.09786 6.45807 4.82754 5.74923 6.34088 4.91330 5.72475 6.83266 4.68479 5.51516 5.06437 5.33702 4.91345 5.34071 5.92656 7.24881 6.32424 53 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 30 4.05087 5.20920 6.23268 5.82534 4.71750 5.81127 6.83008 0.78466 5.82864 3.05673 4.39045 6.00579 5.99505 6.14623 6.04765 5.30744 4.32020 0.89457 7.02480 5.75704 54 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 31 5.47908 6.45166 5.94928 5.96885 3.39846 5.50150 4.94121 5.43505 5.86082 4.55640 5.96400 5.61826 5.98983 5.81052 5.73824 5.45439 5.78489 5.35905 5.04495 0.11283 55 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 32 3.09472 5.18582 3.43408 1.75673 4.46611 2.16950 4.19994 3.85452 3.04781 1.89258 4.34002 3.48972 4.32802 3.38246 3.49234 3.16074 1.72969 3.54864 5.77999 4.46707 56 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00801 5.22742 5.94976 0.61958 0.77255 0.48576 0.95510 33 4.97577 6.77802 4.05890 0.09786 6.45807 4.82754 5.74923 6.34088 4.91330 5.72475 6.83266 4.68479 5.51516 5.06437 5.33702 4.91345 5.34071 5.92656 7.24881 6.32424 57 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00540 5.22481 * 0.61958 0.77255 0.00000 * //