Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype5.1.hmm @ 9:a0d5e1f5bec0 draft
Uploaded
| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:09:49 -0400 |
| parents | 36cb22bd911d |
| children |
line wrap: on
line source
HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype5.1 LENG 19 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 23 14:22:49 2015 NSEQ 63 EFFN 63.000000 CKSUM 3834339736 STATS LOCAL MSV -6.2724 0.72371 STATS LOCAL VITERBI -6.3568 0.72371 STATS LOCAL FORWARD -3.8078 0.72371 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.53914 6.14473 4.96223 5.80646 3.97497 3.74976 2.36174 3.97366 3.02081 2.87199 4.36966 2.63935 3.61947 4.30841 2.25059 2.91452 2.26063 4.59058 3.90709 2.36277 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.00000 * 1 0.64512 7.39058 3.59767 7.98774 8.36224 3.87895 8.47645 7.88986 7.94509 7.58346 8.29417 7.14275 7.07985 7.94265 7.85861 1.75012 1.74840 2.60301 9.70084 8.73147 1 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 2 0.44731 7.38667 8.11551 8.17847 8.39737 1.83812 8.53059 7.93376 8.02437 7.62684 8.32775 3.73279 3.26296 8.01301 7.89402 5.69479 2.14736 4.18473 9.73301 8.78425 2 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 3 7.58102 9.16548 7.50896 7.22281 9.13039 7.57427 7.99683 8.78123 0.18208 8.00004 9.01289 1.83922 8.12569 7.21885 6.39111 7.60509 7.81126 8.40091 9.53267 8.77813 3 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 4 7.00921 8.75739 8.14144 6.83876 7.92243 7.33700 3.35036 7.82644 5.10090 7.02218 1.77526 6.99317 7.66742 6.22020 0.25063 6.99791 7.06893 7.56392 8.69184 7.53734 4 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 5 7.13740 8.29676 9.13941 8.48284 6.09372 8.48107 8.79417 5.42338 7.83006 0.29528 3.00604 8.76351 8.34463 7.87879 3.28738 8.01030 1.86061 5.89886 8.52783 7.75243 5 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 6 1.69153 7.40211 8.17070 8.22354 8.30164 6.22717 8.55905 2.97846 8.03582 7.37178 8.20964 7.21765 7.11755 8.04349 7.90820 5.73550 0.28365 6.58889 9.71423 8.74685 6 T - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 7 0.23345 7.45171 8.06686 8.13666 7.57556 6.25548 8.30720 7.93712 8.02800 7.55459 8.33573 7.20786 7.14327 8.00829 7.90542 3.22221 6.15090 6.93565 9.09493 1.84787 7 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 8 8.00198 8.73982 8.59588 8.67155 3.21204 8.27005 2.97087 7.50796 8.43302 6.53470 7.98004 1.71556 8.49875 7.93432 8.13231 7.69708 8.17073 7.48599 6.79971 0.32619 8 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 9 1.83721 7.94253 3.70991 5.90293 8.53502 6.29276 7.65721 8.13108 7.04128 7.69318 8.52353 0.42512 7.12346 6.91686 7.63306 1.89585 6.39223 7.24128 9.81644 8.42836 9 N - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 10 0.24828 7.38566 8.18228 8.24995 8.40660 3.40983 8.54819 7.93095 8.04865 7.63596 8.33605 7.18981 7.08502 8.03568 7.90449 5.69509 1.83655 3.98418 9.74226 8.79978 10 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 11 0.30988 7.46945 3.42383 7.21025 8.38074 6.21262 8.21353 7.90603 7.41364 7.56906 8.30230 6.94878 7.08709 7.58176 1.84895 3.03971 6.12389 3.99854 9.67476 8.63245 11 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 12 5.25813 7.67489 5.56392 3.50615 7.07179 3.47775 6.07754 6.50629 3.64318 4.04172 6.72269 5.46599 6.36860 3.07864 1.40848 2.96079 1.87646 6.09771 0.98035 6.71049 12 w - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 13 6.32316 8.22709 7.76756 6.58485 8.38263 3.40903 6.89466 4.20227 3.25361 6.87300 7.77864 6.70575 7.32631 6.03030 0.32569 2.07210 2.93381 7.15940 8.77435 7.80836 13 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 14 5.85894 7.21093 7.42658 6.92794 3.91728 6.90258 1.03853 2.94907 6.74735 2.88334 6.34249 2.78017 7.24707 2.89783 6.79096 1.86265 6.08642 5.51299 6.89061 1.48240 14 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 15 5.49584 8.04996 3.83683 4.92100 7.37271 6.03070 0.91207 6.88830 5.13054 6.33967 7.11709 2.37375 2.42551 2.29482 3.25345 3.32588 5.74146 6.44468 8.44561 1.65782 15 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 16 4.00587 6.46810 6.43275 5.84626 3.31964 6.08618 2.24808 4.13906 5.72851 2.63749 5.58279 6.06056 1.06490 3.27446 4.45376 1.83912 1.98920 4.72213 7.07861 3.34853 16 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 17 3.43765 3.52132 6.97488 6.36115 3.60921 6.18814 1.47894 2.40824 6.14784 3.41770 5.51607 2.65212 4.22602 6.27990 6.15868 3.12777 5.25311 4.64422 7.00880 0.91369 17 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 18 1.64387 6.49035 4.16933 5.74747 3.32316 1.89679 1.45845 2.66585 5.64553 4.68781 5.60406 2.55428 4.42959 5.88301 5.86241 5.34175 2.22621 3.77865 7.09817 2.99079 18 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00065 7.73902 8.46137 0.61958 0.77255 0.48576 0.95510 19 5.10557 6.48423 7.04715 6.44933 1.65617 6.25926 0.97188 2.93409 6.23544 2.00610 5.60198 3.71532 6.63091 6.36334 6.24376 3.52454 1.87116 4.73559 7.03058 5.78934 19 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00044 7.73881 * 0.61958 0.77255 0.00000 * //