Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype8b.hmm @ 9:a0d5e1f5bec0 draft
Uploaded
| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:09:49 -0400 |
| parents | 36cb22bd911d |
| children |
line wrap: on
line source
HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype8.5 LENG 36 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 30 10:18:41 2015 NSEQ 7 EFFN 7.000000 CKSUM 3525130470 STATS LOCAL MSV -7.0136 0.72467 STATS LOCAL VITERBI -7.5293 0.72467 STATS LOCAL FORWARD -3.6782 0.72467 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.82373 5.62238 2.85600 2.24629 4.38480 3.39708 4.46701 3.19464 2.81832 2.20391 3.95464 3.21745 4.18333 2.87110 2.74405 2.92929 3.03827 2.85376 4.39567 3.31130 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.00000 * 1 2.05726 5.58300 3.57351 3.01095 4.88265 4.03831 4.22578 4.32348 1.61719 2.36427 4.64949 3.54040 4.43078 3.34693 2.28850 2.16454 2.18071 3.95170 6.05294 4.69204 1 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 2 0.06646 5.99436 6.05007 6.09853 6.58762 4.75510 6.75834 6.17338 6.16271 5.85365 6.77322 5.67765 5.59464 6.31598 6.11467 4.40710 4.77091 5.39921 7.65492 6.86769 2 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 3 0.29290 5.39128 5.88195 5.79757 5.71277 4.33290 6.34233 4.19652 5.68513 4.55214 5.61800 5.19978 5.17500 5.81921 5.68555 3.84126 4.12994 2.00287 7.31362 6.21044 3 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 4 4.25277 6.57059 0.50285 3.49288 6.05675 2.11659 5.24926 5.62294 4.45388 2.04573 6.12664 4.06057 5.17276 4.47082 5.09614 4.18718 4.63099 5.19583 7.34492 5.87226 4 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 5 3.48791 5.74778 3.70566 0.93539 4.88660 4.22414 4.38703 4.44141 2.04505 2.26054 4.80951 3.72876 4.63081 3.53835 3.44993 3.48879 3.71101 4.10694 6.10757 2.37779 5 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 6 5.64252 6.70979 6.84485 6.66198 4.78741 6.13329 7.00633 4.16668 6.58227 0.07207 4.60446 6.91652 6.47374 6.50500 6.43145 6.35629 5.90560 4.55149 6.92085 5.99983 6 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 7 3.77868 6.37819 1.15133 1.46715 5.70129 4.22683 4.62142 5.21553 3.47688 4.66573 5.45452 3.67578 4.76675 2.05545 2.02811 3.68261 4.03604 4.76288 6.78845 5.31841 7 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 8 2.04975 5.87995 3.67951 1.59264 5.26465 4.15919 4.28090 4.71889 1.92852 4.16559 4.92475 3.62789 4.54420 2.15548 1.65167 3.38068 3.63633 4.29492 6.25744 4.90414 8 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 9 0.96953 5.27403 5.60398 5.36994 5.64222 2.02293 5.98093 5.00897 5.28234 4.77525 5.60001 4.93800 4.98235 5.42367 5.37105 1.98244 3.95208 1.34110 7.05599 5.95568 9 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 10 3.95657 6.61982 1.83562 0.81795 5.91859 4.27540 4.76614 5.45900 3.73022 4.90331 5.71858 2.07168 4.87163 3.91347 2.17912 3.83205 4.23199 4.99400 7.03468 5.51314 10 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 11 1.63582 5.69006 3.49861 1.53323 5.01310 4.02697 4.22348 4.47468 2.95469 2.43442 4.74642 2.24191 4.42842 3.33320 2.24922 3.23825 3.49406 4.07067 6.13921 4.75324 11 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 12 1.63088 5.63448 3.48493 2.07288 4.95377 2.40080 4.20666 4.41477 2.96180 2.39704 4.69884 3.48947 4.40108 2.08736 3.44739 2.22306 3.45688 4.01474 6.10237 4.71469 12 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 13 0.93119 5.86337 4.04143 3.44389 5.42230 4.31298 4.50186 4.83540 1.84095 4.30420 5.09948 3.90803 4.74420 3.62121 2.06909 2.15846 3.84330 4.42070 6.39488 5.11789 13 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 14 3.29325 5.67300 3.58154 2.07179 4.98936 4.06829 4.24159 4.43269 2.93803 3.95570 4.73056 3.55738 4.46088 1.64152 2.07864 3.27811 2.24796 1.82307 6.11758 4.75398 14 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 15 1.66700 5.88304 3.69259 2.09658 5.26934 4.16614 4.28368 4.72181 1.52904 4.16780 4.92800 3.63516 4.54984 2.03874 2.05739 3.38767 3.64212 4.29898 6.25847 4.90812 15 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 16 1.61905 4.84880 5.25141 4.64675 3.85204 4.61998 4.94337 2.04415 4.45014 1.38226 2.24957 4.72327 4.96575 4.61479 2.24721 3.92899 3.68848 3.00668 5.46179 4.29983 16 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 17 2.16830 5.76681 2.10751 2.05849 5.11011 3.99296 4.20118 4.59885 2.94871 4.07156 4.81013 2.26714 2.44909 2.13119 3.44642 3.20579 2.31204 4.15693 6.19907 4.78245 17 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 18 3.26693 5.70776 3.54480 2.98122 5.04501 4.03940 4.20919 2.37034 1.62355 4.00069 4.75793 2.27963 2.44696 3.31433 2.19730 2.05238 3.49411 4.09578 6.13945 4.75971 18 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 19 3.53978 5.01884 4.87592 2.20295 4.08263 4.63565 4.99402 3.13661 4.26022 0.85760 4.02328 4.60377 5.01075 4.50239 4.46426 3.94850 2.21802 2.02791 5.69630 4.51484 19 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 20 2.18475 5.66596 2.28093 1.96330 4.99147 3.97943 2.42329 2.39904 2.08634 3.96281 4.71202 3.45441 4.37411 3.27401 3.40370 3.17270 3.43307 4.04617 6.11003 2.58776 20 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 21 3.44807 5.89621 3.42795 2.03009 5.35056 2.27113 4.45558 4.84198 3.26358 4.33096 5.09060 1.56117 4.58430 3.57369 3.77246 2.11140 1.58956 4.38410 6.47110 5.05030 21 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 22 4.67632 6.62681 5.53156 4.35986 6.38008 5.11650 4.73785 5.53277 1.72111 4.77999 5.69828 4.60158 5.39090 0.77341 1.35928 4.62840 4.70842 5.25067 6.66597 5.67763 22 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 23 5.25645 6.33284 7.20626 6.63656 4.09121 6.78039 6.95361 3.40334 6.51181 0.40272 1.46913 7.02569 6.46077 6.06672 6.29530 6.31476 5.41989 3.85565 6.52726 5.71446 23 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 24 2.03754 5.93899 3.63873 1.56928 5.32356 4.18751 4.34329 4.77785 2.94850 4.22981 4.99732 3.66010 4.59451 1.64182 1.56130 3.44431 3.70758 4.35698 6.32676 4.97041 24 r - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 25 1.54318 4.85683 2.30492 3.83084 3.98105 4.30260 4.59241 3.31338 3.75958 2.08686 2.32175 4.15671 4.68275 4.02826 4.04265 2.29082 3.50096 2.09707 5.46469 4.25414 25 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 26 2.16771 5.38063 6.26526 5.76392 4.65787 5.69147 6.30082 1.75576 5.66944 1.36033 4.43679 5.86354 5.93244 5.86029 5.76831 5.09253 4.41290 0.96429 6.63794 5.45199 26 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 27 1.23652 5.70513 3.55979 1.92249 5.12363 4.14223 4.55505 4.51186 3.40003 4.13489 4.94938 1.56338 4.64731 3.70753 3.88151 3.48232 3.74650 2.25555 6.36248 4.99922 27 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 28 3.31451 5.77997 3.47795 1.27893 5.15743 2.34519 4.27848 4.63508 3.01281 4.11929 4.87064 3.53534 2.25289 3.38461 2.22858 3.28139 2.16274 4.20065 6.25268 4.85241 28 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 29 3.25346 5.07118 3.99792 3.43056 4.22925 4.19050 4.42825 3.59601 3.36562 1.60766 4.17188 3.87002 4.57412 2.29750 2.29514 2.23056 2.15658 2.17686 5.64030 4.38967 29 l - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 30 0.29735 5.36202 5.71217 5.72481 6.25578 4.15364 6.34716 5.77492 5.72565 5.47960 6.21358 5.05810 5.03782 5.79097 5.70449 1.78844 4.04382 4.80717 7.59236 6.58387 30 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 31 3.63762 5.07852 5.18558 4.54237 3.96078 4.72366 4.91272 3.33057 2.06629 1.93442 4.04389 4.69845 5.06881 4.47910 4.14448 4.04565 3.86241 2.08615 0.98723 4.29906 31 w - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 32 3.44452 5.98651 2.18657 2.00980 5.32678 2.32289 4.37181 4.82536 3.17183 4.29508 5.04836 2.19858 4.54436 3.48284 3.68960 1.55673 2.08210 4.37864 6.42540 4.98744 32 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 33 4.31402 5.54214 6.37501 5.87757 4.49820 5.79032 6.39976 0.55337 5.75809 1.72811 4.25418 5.99625 6.00442 5.87407 5.82345 5.20921 2.26796 2.69943 6.61359 5.50711 33 I - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 34 5.92010 6.68547 6.55133 6.61470 1.74911 6.20720 4.71518 5.42457 6.37424 4.46119 5.90323 5.68275 6.44608 5.89547 6.08321 5.64700 6.09737 5.40829 4.77637 0.27536 34 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 35 3.36547 5.20551 3.94775 1.28781 4.32340 4.24746 4.53455 3.68619 3.49724 3.43669 4.33292 3.92922 4.66729 3.81710 3.88698 3.52726 2.07086 2.09291 5.75594 1.75822 35 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00529 5.64135 6.36369 0.61958 0.77255 0.48576 0.95510 36 1.60368 5.97710 2.14232 2.00015 5.32135 1.61897 4.37759 4.81649 3.17333 4.28990 5.04571 3.55423 4.54985 3.48970 2.21942 3.39154 3.69276 4.37307 6.42228 4.98891 36 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00356 5.63962 * 0.61958 0.77255 0.00000 * //