Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype2a.hmm @ 8:e75a85590041 draft
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| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:09:07 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype2.1 LENG 37 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 16 13:47:44 2015 NSEQ 8 EFFN 1.011719 CKSUM 4013176524 STATS LOCAL MSV -7.3787 0.71954 STATS LOCAL VITERBI -7.8390 0.71954 STATS LOCAL FORWARD -4.2263 0.71954 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.89909 3.74986 2.77516 2.13578 3.48962 1.89953 4.37464 2.89004 2.66913 2.73220 4.34843 3.12646 4.18084 3.34570 3.21165 2.95244 3.17965 2.69553 3.85796 3.56963 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.00000 * 1 3.54028 4.91353 4.70902 4.36249 3.29315 4.38993 4.91843 2.52611 4.12791 0.55887 3.23618 4.60723 4.77723 4.41673 4.24593 4.01805 3.82390 2.64525 5.27673 4.07080 1 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 2 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 2 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 3 3.37471 5.51389 0.54602 2.59938 4.94310 3.48993 4.26433 4.61305 3.41669 4.16719 5.16454 3.16769 4.16619 3.51229 3.96793 3.30854 3.72416 4.22126 6.04395 4.77803 15 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 4 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 16 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 5 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 17 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 6 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 18 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 7 3.01429 0.46800 4.58839 4.41069 4.34441 3.55755 4.98838 3.55655 4.24544 3.45017 4.58606 4.31427 4.28789 4.57841 4.30762 3.28478 3.50894 3.27538 5.67559 4.62615 19 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 8 3.07366 4.54098 4.56530 4.25029 3.81078 4.04980 5.00403 2.09394 4.12388 2.44834 3.73731 4.38537 4.60101 4.46570 4.30387 3.58331 3.43271 0.69510 5.64600 4.39314 20 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 9 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 21 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 10 3.07540 5.63733 1.92642 0.98277 4.93295 3.33307 3.88809 4.45780 2.90736 3.95828 4.81890 2.80245 3.96011 3.05725 3.49873 2.95626 3.36685 4.02976 6.09730 4.59932 22 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 11 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 23 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 12 2.61670 4.72576 2.83544 2.64214 4.47186 3.22074 4.00157 4.00590 2.89049 3.60852 4.43951 1.45033 3.87398 3.20057 3.31061 1.72012 3.01196 3.52259 5.74535 4.38680 24 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 13 3.18786 5.15548 3.16574 2.93934 4.36609 3.61312 4.09560 4.06125 2.74011 3.52920 4.56101 3.39703 4.17949 0.75135 3.01203 3.22796 3.49074 3.77425 5.58464 4.30678 25 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 14 2.62414 4.46567 3.75715 3.54048 4.29629 3.29033 4.52771 3.46543 3.49010 3.31683 4.35592 3.68547 4.02413 3.87076 3.72401 2.83031 0.72173 3.12305 5.70345 4.51679 26 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 15 3.54028 4.91353 4.70902 4.36249 3.29315 4.38993 4.91843 2.52611 4.12791 0.55887 3.23618 4.60723 4.77723 4.41673 4.24593 4.01805 3.82390 2.64525 5.27673 4.07080 73 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 16 3.30304 5.25073 3.49871 3.07493 4.71290 3.74216 3.98571 4.16650 0.66634 3.66643 4.62224 3.48025 4.22929 3.16725 2.55279 3.33084 3.53776 3.86040 5.64219 4.50848 74 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 17 3.30304 5.25073 3.49871 3.07493 4.71290 3.74216 3.98571 4.16650 0.66634 3.66643 4.62224 3.48025 4.22929 3.16725 2.55279 3.33084 3.53776 3.86040 5.64219 4.50848 75 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 18 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 76 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 19 0.63212 4.38798 3.82513 3.64666 4.40812 3.20119 4.62542 3.58481 3.67229 3.45020 4.45583 3.70357 3.97221 3.98499 3.89094 2.74045 3.04101 3.18084 5.80127 4.64306 77 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 20 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 78 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 21 3.41077 5.20193 3.93812 3.39616 4.64126 3.81961 4.11430 4.21689 2.44143 3.67393 4.67610 3.72542 4.31596 3.32774 0.57969 3.48600 3.66066 3.92927 5.59809 4.51005 79 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 22 3.21242 4.49706 5.02328 4.54091 3.72491 4.61679 5.25372 1.42115 4.43581 2.21450 3.51541 4.73495 4.92083 4.70070 4.62351 4.02136 3.48149 0.91139 5.72396 4.51032 80 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 23 3.74886 5.10495 4.33368 4.13454 2.38446 4.22100 3.82068 3.71768 3.98408 3.08469 4.36022 4.14600 4.69211 4.20899 4.09601 3.84824 4.03984 3.60484 4.03678 0.56064 81 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 24 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 82 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 25 3.30304 5.25073 3.49871 3.07493 4.71290 3.74216 3.98571 4.16650 0.66634 3.66643 4.62224 3.48025 4.22929 3.16725 2.55279 3.33084 3.53776 3.86040 5.64219 4.50848 83 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 26 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 84 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 27 3.29294 4.63814 4.77285 4.41096 3.61464 4.39973 5.09103 0.74759 4.24610 2.14695 3.51258 4.61328 4.81109 4.56863 4.40763 3.93755 3.59082 1.91086 5.56390 4.32261 85 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 28 3.29294 4.63814 4.77285 4.41096 3.61464 4.39973 5.09103 0.74759 4.24610 2.14695 3.51258 4.61328 4.81109 4.56863 4.40763 3.93755 3.59082 1.91086 5.56390 4.32261 86 i - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 29 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 87 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 30 3.03207 5.01709 2.94615 2.87092 4.43628 3.43432 4.23826 4.23141 3.17780 3.84361 4.80662 0.69142 4.10735 3.52221 3.53455 3.09339 3.43100 3.81941 5.70435 4.36960 88 N - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 31 3.07366 4.54098 4.56530 4.25029 3.81078 4.04980 5.00403 2.09394 4.12388 2.44834 3.73731 4.38537 4.60101 4.46570 4.30387 3.58331 3.43271 0.69510 5.64600 4.39314 89 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 32 2.50742 4.42543 3.52579 3.37013 4.42066 3.15118 4.46368 3.99426 3.46687 3.69327 4.59946 3.53181 3.91930 3.79183 3.73308 0.69027 3.01412 3.45540 5.76864 4.51000 90 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 33 3.93082 5.17898 4.62212 4.41705 3.07595 4.12437 4.35949 3.98366 4.14122 3.31679 4.59979 4.50511 4.67111 4.51112 4.20797 4.13113 4.25042 3.88213 0.42626 3.06319 91 W - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 34 3.27549 5.41488 2.67901 0.63899 4.80866 3.51572 4.14791 4.33056 3.07344 3.90036 4.87398 3.17201 4.13983 3.36551 3.50646 3.23223 3.58665 3.98571 5.91750 4.65753 92 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 35 3.70266 5.01241 4.68674 4.47355 0.60090 4.29292 4.06562 3.19995 4.37593 2.49955 3.88807 4.40128 4.75225 4.45660 4.41479 3.94781 4.00802 3.21267 4.23894 2.57372 93 F - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 36 3.37471 5.51389 0.54602 2.59938 4.94310 3.48993 4.26433 4.61305 3.41669 4.16719 5.16454 3.16769 4.16619 3.51229 3.96793 3.30854 3.72416 4.22126 6.04395 4.77803 94 D - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02262 4.19624 4.91858 0.61958 0.77255 0.48576 0.95510 37 3.11940 4.84985 3.85836 3.80474 4.91676 0.36809 4.89265 4.60761 4.02933 4.21612 5.20329 4.02421 4.25011 4.32848 4.21794 3.30250 3.62552 4.07309 5.91373 5.03386 95 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01528 4.18890 * 0.61958 0.77255 0.00000 * //