Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype8a.hmm @ 8:e75a85590041 draft
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| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 14:09:07 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype8.4 LENG 29 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Thu Jul 30 10:01:58 2015 NSEQ 4 EFFN 4.000000 CKSUM 4023134057 STATS LOCAL MSV -6.9375 0.72459 STATS LOCAL VITERBI -7.2275 0.72459 STATS LOCAL FORWARD -3.8492 0.72459 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.04157 5.39514 3.01498 2.06409 3.29765 3.45823 2.89175 3.51583 3.73832 2.21064 4.73380 3.46250 4.09980 2.70578 3.50633 2.06130 3.16488 3.37350 4.64556 3.33410 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.00000 * 1 4.81473 6.42995 4.69044 4.60954 5.86900 4.87909 5.69420 5.93872 4.40133 5.25330 6.39254 5.02444 5.52106 0.11207 4.58815 4.89242 5.18471 5.59733 6.85761 5.82712 1 Q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 2 1.45083 5.16890 3.72449 3.39671 4.04594 3.96659 4.44323 4.03142 3.49530 3.66688 4.56639 1.62308 4.52452 3.80596 3.87903 3.35184 3.56638 3.71140 5.54385 1.48094 2 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 3 3.39038 5.87274 1.59904 2.86399 5.24082 3.94346 4.20276 4.71484 2.86402 4.15947 4.95121 3.40917 4.42064 1.47766 1.52883 3.32331 3.62422 4.29135 6.25197 4.87111 3 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 4 1.38958 5.16691 5.29588 4.94059 4.07703 4.49725 5.50153 3.19410 4.77806 0.66278 3.92904 4.93982 5.07411 4.97136 4.87379 3.96413 3.97521 3.20383 6.01061 4.89652 4 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 5 1.41613 5.31985 3.38018 1.46145 4.96282 3.80134 4.37201 4.37695 3.21536 3.97939 4.78390 3.53481 4.36583 3.52799 3.67916 3.17220 1.62433 3.94330 6.18758 4.83818 5 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 6 4.22799 6.13483 4.67306 3.97976 5.15955 4.65536 0.69677 5.11951 2.74125 4.44322 5.38958 4.28483 5.04750 3.73602 1.32516 4.22185 4.37085 4.82004 6.13904 4.87511 6 h - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 7 4.91943 6.07804 6.20575 5.96913 4.17473 5.59449 6.33051 3.51589 5.80807 0.14441 4.01175 6.19412 5.91567 5.82414 5.73219 5.58379 5.18804 3.83852 6.31563 5.30148 7 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 8 4.84589 6.68580 3.93942 0.11168 6.34285 4.72455 5.62542 6.19623 4.77113 5.59581 6.69205 4.56014 5.41056 4.93081 5.20012 4.78150 5.20758 5.78581 7.15932 6.20155 8 E - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 9 1.55232 6.30850 1.32203 1.25521 5.63060 3.92094 4.47877 5.17387 3.51566 4.63501 5.47309 3.37670 4.55062 3.63889 4.14230 3.53189 3.95526 4.70697 6.78165 5.23942 9 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 10 1.38958 5.16691 5.29588 4.94059 4.07703 4.49725 5.50153 3.19410 4.77806 0.66278 3.92904 4.93982 5.07411 4.97136 4.87379 3.96413 3.97521 3.20383 6.01061 4.89652 10 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 11 0.62497 5.24187 4.15549 3.96197 4.88366 3.96429 1.50434 4.70334 3.95913 4.33197 5.22513 4.19830 4.69164 4.35997 4.23271 3.47391 3.78430 4.20639 6.28175 4.91022 11 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 12 5.00480 6.08998 5.62909 5.52407 1.16142 5.44123 0.67301 4.78317 5.32108 3.93534 5.29777 5.10447 5.78913 5.24595 5.27133 4.93985 5.24391 4.72411 4.47149 2.72077 12 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 13 3.08033 5.22674 3.60488 3.19518 4.98969 3.79287 4.41974 4.44131 3.19355 4.01296 4.80717 3.63156 4.37232 1.46285 3.60411 1.54914 1.50875 3.96856 6.19169 4.87266 13 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 14 1.26996 4.80795 4.78360 4.42454 4.52756 1.53546 5.13305 1.39759 4.36511 3.53464 4.48841 4.38696 4.60553 4.58924 4.54718 3.34332 3.51094 3.22353 6.04202 4.86645 14 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 15 4.85099 5.88613 5.99026 5.82565 1.19052 5.55928 4.37342 4.17762 5.60416 1.37546 4.68637 5.19655 5.79049 5.29835 5.42011 4.95276 5.04859 4.23955 4.45079 1.12430 15 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 16 3.52934 5.90558 1.46861 2.86010 5.10220 3.93438 4.43042 4.60767 3.41983 1.47145 5.05059 1.46475 4.52085 3.61021 3.97201 3.46922 3.81148 4.25655 6.38802 4.93450 16 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 17 1.55103 6.31700 1.26166 1.31117 5.63868 3.92228 4.48342 5.18287 3.52414 4.64370 5.48333 3.37790 4.55393 3.64422 4.15296 3.53713 3.96244 4.71550 6.79058 5.24642 17 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 18 1.26110 4.81973 4.65629 4.26554 1.56921 3.83078 4.96971 3.92508 4.21607 3.64611 4.55018 4.27196 4.53763 4.44242 4.43581 1.36179 3.47456 3.56162 5.86858 4.56810 18 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 19 3.62071 5.53882 3.53672 0.77551 4.91227 4.21043 4.81579 3.53618 3.74283 3.74848 4.82548 3.90801 4.79318 4.04029 4.16216 3.74510 3.93788 1.37672 6.39121 5.06609 19 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 20 3.43796 4.93391 4.71834 4.23785 3.25084 4.41356 4.44188 3.38947 4.09263 1.40972 4.03632 4.36938 4.82652 4.31583 4.26413 1.62188 3.69894 3.22739 4.87364 1.40771 20 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 21 3.58762 5.94171 3.05076 0.76240 5.59949 3.94199 4.63427 5.15007 3.62465 4.65553 5.50337 3.55585 4.60645 3.81244 4.15866 1.32563 3.94548 4.63913 6.76883 5.31471 21 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 22 3.01531 4.94217 4.81094 4.66611 5.55899 3.72357 5.55399 5.02772 4.69381 4.73337 5.51692 4.43160 4.56817 4.90606 4.85749 0.63000 1.28243 4.24050 6.89758 5.78220 22 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 23 1.47305 4.99757 3.91330 3.42455 4.16444 4.03063 4.42276 3.48931 3.28463 1.59429 4.08781 3.82741 4.49152 1.61536 3.61388 3.34868 3.44847 3.29707 5.64739 4.40675 23 a - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 24 3.15911 5.18310 3.42444 1.61552 4.48291 3.91010 4.30483 1.63962 3.18442 3.49446 4.38087 3.55829 4.39490 3.50819 3.61672 1.50727 3.43274 3.43412 5.84031 4.53103 24 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 25 0.53591 5.00108 4.96942 4.93050 5.75225 1.36260 5.77526 5.24281 5.05343 4.94766 5.71949 4.57125 4.64130 5.17840 5.13993 3.30015 3.67156 4.37764 7.05245 6.02617 25 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 26 3.27214 4.79974 4.82140 4.32828 3.71013 4.24846 4.71789 3.19286 4.12167 2.97507 3.99821 4.41921 1.51565 4.39078 4.26654 3.62933 3.57620 1.49108 1.60507 3.93283 26 v - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 27 3.54534 5.83964 3.11521 1.31571 5.57375 3.93490 4.66835 5.11962 3.65044 4.63964 5.48516 3.59890 4.60747 3.85099 4.16541 0.76147 3.91941 4.59684 6.75314 5.32189 27 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 28 3.48291 5.35395 4.92936 4.93521 5.74889 4.08558 5.87396 5.53331 5.11190 5.16623 6.03882 4.79831 4.92226 5.33069 5.21964 0.15816 4.05785 4.73385 6.97619 5.89655 28 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00858 5.15864 5.88099 0.61958 0.77255 0.48576 0.95510 29 3.35366 5.82426 3.02908 1.36223 5.15518 3.87413 1.73126 4.68575 3.09379 4.17501 4.97097 3.36476 4.40093 3.39954 3.58957 1.51991 3.61835 4.25629 6.29795 4.85860 29 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00578 5.15585 * 0.61958 0.77255 0.00000 * //