Mercurial > repos > johnheap > vapper
view data/Motifs/Phylotype13c.hmm @ 18:e7da2274c9f6 draft
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| author | johnheap |
|---|---|
| date | Mon, 03 Jun 2019 16:00:24 -0400 |
| parents | 36cb22bd911d |
| children |
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HMMER3/f [hmmer3.1-snap20121016 | October 2012] NAME Phylotype14.3 LENG 23 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Tue Jul 28 15:58:32 2015 NSEQ 60 EFFN 38.909912 CKSUM 3233938693 STATS LOCAL MSV -6.6788 0.72026 STATS LOCAL VITERBI -6.9771 0.72026 STATS LOCAL FORWARD -4.0744 0.72026 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.82531 2.05809 2.83212 2.72052 4.92550 1.77574 3.19463 5.51568 2.78183 2.41318 4.82188 2.55520 4.24228 3.10702 3.14577 2.60296 3.43608 4.49851 5.62702 5.05682 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.00000 * 1 7.01107 8.01775 8.77332 8.31849 3.20015 8.32030 8.14471 5.10292 8.25414 0.06323 5.46284 8.56639 8.06829 7.70758 7.96962 8.04077 7.16390 5.59755 7.84986 6.65931 1 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 2 8.34315 0.00289 8.63533 8.72712 9.21980 7.64340 9.22864 9.61784 8.90281 8.69461 10.02758 8.98808 8.29482 9.20396 8.64220 8.70546 8.79460 9.18010 9.53267 9.46273 2 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 3 7.54892 8.78173 8.11156 8.19720 8.82444 0.03738 3.42029 9.28623 8.52188 8.48711 9.67952 8.39243 8.09022 8.76084 8.41245 7.79307 8.06777 8.65950 9.43200 8.95840 3 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 4 6.02769 8.04179 6.83606 5.72883 7.74637 6.52368 6.18378 6.93456 0.80333 3.41886 3.76168 3.78842 6.80350 1.69600 1.38118 5.98377 3.87397 6.63710 8.11162 7.09134 4 k - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 5 4.90543 7.45655 4.68111 2.40883 6.80898 2.58035 3.80172 6.31243 3.34027 5.77584 6.53805 2.03107 5.97607 4.93288 5.14828 0.60863 2.87848 5.86007 7.90261 6.45661 5 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 6 0.35773 7.16803 5.39593 3.66777 6.70654 5.67962 5.93377 6.11499 3.38724 5.62949 6.43818 5.31157 2.89405 5.06731 2.67458 3.87025 5.22426 2.85251 7.76193 6.48468 6 A - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 7 2.52999 6.91065 4.64784 4.09193 6.25691 2.80047 5.35934 5.74307 1.73079 5.21642 5.95156 3.19092 4.12515 2.30009 2.15672 2.65479 1.35855 3.39982 7.34299 5.93212 7 t - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 8 6.01756 8.95144 1.02714 0.85882 8.14723 5.93698 6.66491 7.80072 2.96014 3.56579 8.17495 2.12474 6.67294 5.86511 6.78886 5.78603 6.35833 7.28167 9.34034 7.61603 8 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 9 6.90500 7.92712 8.88122 8.29286 2.65839 8.54636 8.55818 4.92678 8.22956 0.15723 2.84989 8.76595 8.05187 7.63296 7.94048 8.10794 7.04441 5.43308 8.03209 7.21002 9 L - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 10 6.26419 7.96412 7.72635 7.04886 6.55898 0.19164 7.12006 7.37986 5.61442 3.08293 7.73690 7.00320 7.34885 6.60294 2.59920 6.40967 6.65583 7.05010 3.33781 6.48628 10 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 11 8.34315 0.00289 8.63533 8.72712 9.21980 7.64340 9.22864 9.61784 8.90281 8.69461 10.02758 8.98808 8.29482 9.20396 8.64220 8.70546 8.79460 9.18010 9.53267 9.46273 11 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 12 3.41500 6.92613 2.05307 1.02600 6.27234 1.89804 5.36987 5.75963 2.77667 5.23184 5.96684 4.64636 5.57554 3.26288 2.68740 2.63984 2.98774 5.31745 7.35779 5.94525 12 e - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 13 3.14814 6.91039 3.18675 2.17182 6.25681 2.30174 2.45550 5.74373 1.91395 4.08123 4.16690 2.33003 5.56337 1.62498 3.26915 4.35827 3.27758 3.92934 7.34227 3.77323 13 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06817 7.26521 2.73036 0.61958 0.77255 0.48576 0.95510 14 2.60226 7.83446 1.15034 4.46053 7.14454 1.37436 2.50955 6.67409 2.85995 6.12489 6.92016 2.16153 6.16399 2.72370 5.53641 5.09358 5.46783 6.21281 8.25585 6.75580 14 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00111 7.19815 7.92050 0.61958 0.77255 1.50161 0.25202 15 1.75941 6.85115 4.58648 2.83005 6.19707 3.00007 4.24207 5.68364 4.03331 5.15680 5.89159 2.70928 3.14131 1.40377 2.90675 1.79232 3.44567 4.07325 7.28333 3.33925 15 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00111 7.19815 7.92050 0.61958 0.77255 1.50161 0.25202 16 4.34177 6.85543 2.91781 2.66240 6.20198 0.96306 5.30134 5.68878 2.44804 5.16116 3.00712 3.14882 5.50808 2.61701 2.43262 2.63976 4.57289 5.24688 3.48062 5.87546 16 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.09051 7.19815 2.45587 0.61958 0.77255 1.50161 0.25202 17 4.29662 6.81211 2.07484 3.97497 6.15744 2.88792 3.15924 5.64504 2.44114 5.11768 5.85385 1.13303 3.31599 4.35121 4.48818 1.91396 2.72564 5.20312 7.24432 3.23132 17 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00122 7.10885 7.83120 0.61958 0.77255 2.08143 0.13325 18 3.07397 7.35574 2.74829 2.12382 6.68425 0.76675 2.97445 6.19196 4.51549 5.65452 6.41767 3.19533 3.59249 4.80014 1.98865 4.70880 5.03205 5.74067 7.78344 6.32767 18 g - - - 2.69037 4.42644 2.77617 2.73326 3.46773 2.39055 3.72914 3.29773 2.67085 2.69774 4.25109 2.89229 2.74159 3.18565 2.89964 2.38227 2.77389 2.98937 4.58896 3.61922 0.75842 0.63263 7.83120 0.84359 0.56241 0.08123 2.55077 19 8.34315 0.00289 8.63533 8.72712 9.21980 7.64340 9.22864 9.61784 8.90281 8.69461 10.02758 8.98808 8.29482 9.20396 8.64220 8.70546 8.79460 9.18010 9.53267 9.46273 23 C - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 20 3.00697 7.16309 4.82097 3.19712 6.59768 2.74719 0.63565 6.06710 4.65306 2.76547 6.37395 3.89594 2.73726 4.96146 5.15349 2.12481 5.06853 5.64284 7.76643 6.36879 24 H - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00104 7.26521 7.98755 0.61958 0.77255 0.48576 0.95510 21 3.22497 6.96287 3.43872 3.06526 6.30821 1.65098 3.69053 5.79656 2.25767 5.26843 6.00479 1.68871 5.60377 4.49851 4.63808 1.44014 2.37896 5.35392 7.39468 5.97985 25 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06917 7.26521 2.71613 0.61958 0.77255 0.48576 0.95510 22 4.56372 7.09833 1.91102 2.42129 6.43842 1.13700 5.50089 5.93248 3.19074 5.40150 6.14613 1.74525 5.68949 4.60520 3.47132 2.19242 4.80137 3.39903 7.52849 6.10130 26 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.07712 7.19715 2.61085 0.61958 0.77255 1.51076 0.24941 23 2.85468 6.86371 2.70768 4.00760 6.20882 3.37166 2.94906 5.69775 3.46274 5.16955 5.90709 0.69882 5.49924 2.71074 4.54070 2.38607 3.08845 5.25492 7.29610 5.87987 27 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00081 7.12084 * 0.61958 0.77255 0.00000 * //