view data/Motifs/Phylotype2b.hmm @ 30:6669fd407dc9 draft default tip

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author johnheap
date Fri, 07 Jun 2019 11:07:05 -0400
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HMMER3/f [hmmer3.1-snap20121016 | October 2012]
NAME  Phylotype2.2
LENG  29
ALPH  amino
RF    no
MM    no
CONS  yes
CS    no
MAP   yes
DATE  Thu Jul 16 13:48:31 2015
NSEQ  42
EFFN  3.186401
CKSUM 2149497564
STATS LOCAL MSV       -7.0185  0.71993
STATS LOCAL VITERBI   -7.2652  0.71993
STATS LOCAL FORWARD   -4.4220  0.71993
HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.25053  5.40393  2.90786  2.77490  3.56997  2.97518  2.59573  3.34771  2.27008  2.21710  3.32368  3.55963  4.37213  2.74568  2.54214  3.15044  3.53219  2.70921  6.01663  4.51593
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.00000        *
      1   2.90292  5.41152  1.92318  2.28062  4.75155  3.65087  3.85798  4.23722  2.15500  3.71488  4.45594  1.99703  4.05793  2.95822  3.10164  2.32720  2.58119  3.43153  5.84616  4.43254      1 d - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      2   0.59633  4.72379  4.48494  4.12891  4.84056  3.08054  5.01169  4.19451  4.10041  3.93903  4.78030  4.11236  2.41403  4.34697  4.35379  3.04361  3.33345  2.66384  6.23525  5.06542      2 A - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      3   3.06311  5.58431  2.74877  1.04228  4.91177  3.69917  3.98380  4.40133  2.32229  3.88113  4.64230  2.27919  4.16034  3.09801  3.28438  3.00666  3.30536  3.16426  6.01826  4.58907      3 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      4   2.88554  4.52170  3.91575  3.34398  3.64590  3.90239  4.16966  2.48881  3.08602  2.72692  1.84541  2.45817  4.27887  3.56455  3.17861  2.75084  2.77314  2.54195  5.11439  2.47937      4 m - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      5   3.84317  6.63952  0.80384  1.13256  5.89282  3.85386  4.54299  5.51673  3.76530  4.93743  5.87252  3.29695  4.56244  3.73476  4.51389  3.64550  4.17005  5.02195  7.06034  5.42431      5 d - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      6   1.15281  4.75769  4.55460  4.24219  5.27453  2.35597  5.17748  4.74298  4.24105  4.40611  5.17403  4.14877  4.35126  4.46989  4.49743  1.00985  2.73758  4.00039  6.59349  5.44912      6 s - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      7   4.06335  5.97943  4.61700  3.82056  5.21417  4.50717  3.00090  4.93721  2.48820  4.25729  5.19378  4.10942  4.87365  3.50867  0.40645  4.05476  4.18540  4.64207  6.04283  4.86080      7 R - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      8   4.71964  6.23708  5.32447  4.74772  5.91242  4.82553  5.24235  5.66602  3.49026  4.97410  6.02613  4.99065  5.35269  4.49192  0.14029  4.81453  4.96351  5.35268  6.59358  5.73205      8 R - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
      9   4.64335  5.83902  5.93948  5.68072  3.96646  5.37468  6.06162  3.28968  5.49324  0.18767  3.81558  5.89888  5.69807  5.55886  5.45193  5.27981  4.91447  3.58058  6.09528  5.04519      9 L - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     10   3.96838  5.27374  5.60835  5.25443  0.58932  5.00024  4.80488  2.98492  5.09462  2.57512  3.96166  5.09137  5.35713  5.08526  5.08709  4.43771  4.25132  1.87322  4.95309  3.33498     10 F - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     11   3.81877  5.01355  5.92733  5.50823  4.43202  5.44610  6.36337  1.72635  5.46234  2.81628  4.14655  5.66107  5.69056  5.75269  5.64913  4.92138  4.09396  0.43768  6.63719  5.38773     11 V - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     12   4.47317  5.63811  6.29062  5.75253  3.56717  5.84844  6.09629  2.83361  5.54153  0.29270  2.84786  6.03561  5.75775  5.36351  5.45755  5.32820  4.66862  3.18519  5.91088  4.97944     12 L - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     13   4.46680  6.01282  5.31479  5.36444  6.27796  0.07714  6.27693  6.25480  5.65638  5.69195  6.75599  5.48401  5.40386  5.90182  5.66624  4.68308  5.00871  5.59531  6.98477  6.45019     13 G - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     14   0.39728  5.18622  3.62093  2.76325  5.20993  3.79059  4.89887  4.54109  3.87656  4.27896  5.17466  3.89216  4.52842  4.15619  4.22928  3.34181  3.67606  4.06101  6.50526  5.26484     63 A - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     15   3.84993  5.88915  3.91828  3.52643  5.31170  4.28511  4.44241  4.88868  2.75455  4.26787  5.20334  3.93299  4.76699  0.43908  2.58767  3.84566  4.07092  4.55330  6.20815  5.01822     64 Q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     16   4.48288  6.19201  4.72951  4.26526  5.87152  4.68142  4.95979  5.44500  0.18431  4.79787  5.79825  4.59575  5.18426  4.16197  3.35400  4.51796  4.69697  5.12521  6.52322  5.58981     65 K - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     17   4.90098  6.28158  4.91869  4.86696  4.74767  4.86330  0.11602  5.83415  4.74550  5.11025  6.32065  5.19378  5.49635  5.28218  4.88159  5.00890  5.28267  5.53487  6.11860  4.69360     66 H - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     18   4.64335  5.83902  5.93948  5.68072  3.96646  5.37468  6.06162  3.28968  5.49324  0.18767  3.81558  5.89888  5.69807  5.55886  5.45193  5.27981  4.91447  3.58058  6.09528  5.04519     67 L - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     19   3.26111  5.66488  3.35242  2.48660  5.06767  3.90763  2.79461  4.49587  1.84397  3.92747  4.72147  3.37686  4.31579  1.05173  2.84817  3.21389  3.46755  4.09569  5.99704  4.68695     68 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     20   1.68809  5.31602  3.12881  1.51625  4.68284  3.67163  3.94127  4.14335  2.71383  3.67019  4.44000  3.19257  4.10724  2.85118  3.19924  2.39037  2.43819  3.73677  5.84014  4.45354     69 e - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     21   3.39781  5.03360  4.94568  4.61742  4.06776  4.25042  5.25653  3.16055  4.32991  2.61687  0.50008  4.65510  4.86657  4.69107  4.46295  3.73235  2.91943  3.11726  5.92345  4.75587     70 M - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     22   3.72491  6.49367  0.64200  1.65823  5.72897  3.82116  3.26534  5.33271  3.59781  4.76346  5.65558  3.25810  4.50117  3.63237  4.29149  3.54741  4.03450  4.85216  6.89875  5.28569     71 D - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     23   2.94828  5.44404  2.79453  2.36349  4.79574  3.39121  3.87576  4.27299  1.20083  3.74205  4.48890  2.84144  4.09269  2.97676  2.22723  2.90758  2.97122  3.83950  5.86224  4.46521     72 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     24   4.90098  6.28158  4.91869  4.86696  4.74767  4.86330  0.11602  5.83415  4.74550  5.11025  6.32065  5.19378  5.49635  5.28218  4.88159  5.00890  5.28267  5.53487  6.11860  4.69360     73 H - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     25   3.83713  5.01064  5.98357  5.56092  4.47309  5.53942  6.46578  1.10556  5.53905  2.84198  4.16787  5.72963  5.74406  5.83518  5.73728  5.01649  4.10563  0.69598  6.71052  5.45858     74 v - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     26   2.71624  5.61331  3.32699  2.52022  5.01149  3.87245  3.99831  4.44269  1.22911  3.88696  4.67453  3.34619  4.28015  1.49817  2.87473  3.16209  3.41673  4.03957  5.97059  4.64895     75 k - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     27   3.83502  5.92883  3.85977  3.44921  5.52428  4.26055  4.34137  4.94123  0.41325  4.31006  5.21029  3.10953  4.72442  3.48843  2.78165  3.80858  4.03295  4.58260  6.23629  5.08825     76 K - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     28   0.35767  4.78863  4.91002  4.72462  4.99201  3.68636  5.44857  3.87135  4.64189  3.92546  4.94688  4.41837  4.50611  4.86419  4.75946  3.18216  3.48186  2.73465  6.52077  5.37306     77 A - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.01032  4.97440  5.69675  0.61958  0.77255  0.48576  0.95510
     29   2.93519  5.21464  3.29113  2.72311  4.49319  3.73481  3.17327  3.91889  2.42067  1.89245  4.27824  3.24328  4.12197  1.67645  2.66659  2.62772  2.81817  3.57018  5.67894  4.33975     78 q - - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00696  4.97104        *  0.61958  0.77255  0.00000        *
//