# HG changeset patch # User johnheap # Date 1559728450 14400 # Node ID 7983a9305b5332555a249f4b1feaf1c1e02f5ff9 # Parent c0a6a170163e04fe74962a0f10ada7dd94bbd051 Uploaded diff -r c0a6a170163e -r 7983a9305b53 Tryp_V_T.py --- a/Tryp_V_T.py Tue Jun 04 18:11:54 2019 -0400 +++ b/Tryp_V_T.py Wed Jun 05 05:54:10 2019 -0400 @@ -96,7 +96,8 @@ dir_path = os.path.dirname(os.path.realpath(__file__)) # directory of this file refPath = dir_path + "/data/Reference/" + ref + "/" + refBase # eg refPath = data/Reference/Trinity/Trinity.fasta # used for dirty # refPath = 'Trinity.fasta' # dirty one - track_df = pd.read_csv(dir_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t') + cur_path = os.getcwd() + track_df = pd.read_csv(cur_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t') names = track_df['locus'] # print(len(names)) # print(names[:5])