Mercurial > repos > johnheap > vapper

changeset 3:4432e4183ebd draft

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planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy
author johnheap
date Wed, 11 Jul 2018 08:58:14 -0400
parents 82770f07a036
children 8f6469ffef85
files Tryp_G.py Tryp_V.py VAP.xml data/congodata.csv data/congodata_deviationfromthemean.csv data/ogeoTv.csv
diffstat 6 files changed, 21 insertions(+), 98 deletions(-) [+]
line wrap: on
line diff
--- a/Tryp_G.py	Tue Jul 10 09:22:53 2018 -0400
+++ b/Tryp_G.py	Wed Jul 11 08:58:14 2018 -0400
@@ -56,11 +56,6 @@
     argString = "transeq " + name + ".fa " + name + "_6frame.fas -frame=6 " #+quietString
     print(argString)
     returncode = subprocess.call(argString, shell=True)
-    #subprocess.call('ls -l *.fa', shell = True)
-    #sys.exit(1)
-    #if returncode != 0:
-    #    return "Error in Transeq"
-    #return 'ok'
 
 
 def HMMerMotifSearch(name):
@@ -123,60 +118,6 @@
     #print("--------")
     return countList
 
-"""
-def HMMerMotifSearch(name):
-    motifs = ['1', '2a', '2b', '3', '4a', '4b', '4c', '5', '6', '7', '8a', '8b', '9a', '9b',
-              '9c', '10a', '10b', '11a', '11b', '12', '13a', '13b', '13c', '13d', '14', '15a', '15b', '15c']
-    lineCounts = []
-    compoundList = []
-    dir_path = os.path.dirname(os.path.realpath(__file__))
-    phylopath = dir_path+"/data/Motifs/Phylotype"
-    for m in motifs:
-        argString = "hmmsearch "+phylopath + m + ".hmm " + name + "_6frame.fas > Phy" + m + ".out"  #+quietString
-        #argString = "hmmsearch "+phylopath + m + ".hmm " + dir_path+"/data/Test_6frame.fas > Phy" + m + ".out"
-        print(argString)
-        subprocess.call(argString, shell=True)
-
-        hmmResult = open("Phy" + m + ".out", 'r')
-        tempout = open(dir_path+"/data/"+"Phy" + m + ".txt", 'w')
-        regex = r"NODE_[0-9]{1,7}_length_[0-9]{1,7}_cov_[0-9]{1,10}.[0-9]{1,7}_[0-9]{1,2}"
-        n = 0
-        outList = []
-        for line in hmmResult:
-            m = re.search(regex, line)
-            if m:
-                tempout.write(m.group() + "\n")
-                outList.append(""+m.group()+"\n")
-                n += 1
-            if re.search(r"inclusion", line):
-                print("inclusion threshold reached")
-                break
-        compoundList.append(outList)
-        lineCounts.append(n)
-        hmmResult.close()
-        #tempout.close()
-    print(lineCounts)
-    motifGroups = [['1'], ['2a', '2b'], ['3'], ['4a', '4b', '4c'], ['5'], ['6'], ['7'], ['8a', '8b'], ['9a', '9b',
-                                                                                                   '9c'],
-               ['10a', '10b'], ['11a', '11b'], ['12'], ['13a', '13b', '13c', '13d'], ['14'], ['15a', '15b', '15c']]
-    concatGroups = [1, 2, 1, 3, 1, 1, 1, 2, 3, 2, 2, 1, 4, 1, 3]
-    countList = []
-    countIndex = 0
-    totalCount = 0
-
-    for c in concatGroups:
-        a = []
-        for n in range(0, c):
-            a = a + compoundList.pop(0)
-        t = set(a)
-        countList.append(len(t))
-        totalCount += len(t)
-    countList.append(totalCount)
-    print(countList)
-    print("--------")
-    return countList
-"""
-
 
 
 def relativeFrequencyTable(countList, name, htmlresource):
@@ -223,9 +164,11 @@
     congo_df = pd.read_csv(j_fname)
     congo_df.drop('Colour', axis=1, inplace=True)
     congo_df.loc[congo_df.index.max() + 1] = localFreqList
+    ysize = len(congo_df) * 20 / 97.0  # make vertical size equivlanet 20' is ok for 97.
+
     congo_df.set_index('Strain', inplace=True)
 
-    cg = sns.clustermap(congo_df, method='ward', cmap = "RdBu_r", col_cluster=False, yticklabels = congo_df.index.values)
+    cg = sns.clustermap(congo_df, method='ward', cmap = "RdBu_r", col_cluster=False, yticklabels = congo_df.index.values,figsize = (10,ysize))
     plt.setp(cg.ax_heatmap.yaxis.get_ticklabels(), rotation=0, fontsize=8)  # get y labels printed horizontally
     ax=cg.ax_heatmap
     title = "Variant Antigen Profiles of $\itTrypanosoma$ $\itcongolense$ estimated as the phylotype proportion across the\nsample cohort. "
@@ -259,8 +202,9 @@
     congo_df = pd.read_csv(j_fname)
     congo_df.drop('Colour', axis=1, inplace=True)
     congo_df.loc[congo_df.index.max() + 1] = localDevList
+    ysize = len(congo_df) * 20 / 97.0  # make vertical size equivlanet 20' is ok for 97.
     congo_df.set_index('Strain', inplace=True)
-    cg = sns.clustermap(congo_df, method='ward',cmap = "RdBu_r", col_cluster=False, yticklabels = congo_df.index.values)
+    cg = sns.clustermap(congo_df, method='ward',cmap = "RdBu_r", col_cluster=False, yticklabels = congo_df.index.values,figsize = (10,ysize))
     plt.setp(cg.ax_heatmap.yaxis.get_majorticklabels(), rotation=0, fontsize=8)  # get y labels printed horizontally
     ax = cg.ax_heatmap
     title = "Variant Antigen Profiles of $\itTrypanosoma$ $\itcongolense$ expressed as the deviation from the mean phylotypes "
@@ -306,8 +250,8 @@
         compoundList[col].append(-item[0])
         compoundList[col].append(item[1])
         i = i + 1
-    cols = ['r', 'g', 'b', 'c', 'm', 'y', 'grey', 'k']
-
+    colormap = plt.cm.tab20  # nipy_spectral, Set1,Paired
+    cols = [colormap(i) for i in np.linspace(0, 1, 20)]
     fig, ax = plt.subplots(figsize=(9, 6))
     #plt.figure(num=1,figsize=(12, 6))
     i = 0
--- a/Tryp_V.py	Tue Jul 10 09:22:53 2018 -0400
+++ b/Tryp_V.py	Wed Jul 11 08:58:14 2018 -0400
@@ -183,17 +183,16 @@
     col = cg.ax_col_dendrogram.get_position()
     cg.ax_col_dendrogram.set_position([col.x0, col.y0*1.08, col.width, col.height*1.1])
 
-
+    countryList = pd.unique(geo_df['Location'])
+    colourList = pd.unique(geo_df['colour'])
     legend_elements = [Patch(facecolor='orangered', label='COG Present'),
-                       Patch (facecolor='skyblue', label='COG Absent'),
-                       Patch(facecolor='w', label=''),
-                       Patch (facecolor='b', label='Nigeria'),
-                       Patch(facecolor = 'g', label='Uganda'),
-                       Patch (facecolor='c', label='Gambia'),
-                       Patch (facecolor='r', label='Ivory Coast'),
-                       Patch(facecolor='m', label='Brazil'),
-                       Patch(facecolor='k', label=name)]
-    #legend_test = [[Patch(facecolor='orangered'),Patch(facecolor='r')],["test","test2"]]
+                       Patch(facecolor='skyblue', label='COG Absent')]
+
+    for i in range(0, len(colourList)):
+        print("country = %s, colour = %s" % (countryList[i], colourList[i]))
+        p = Patch(facecolor=str(colourList[i]), label=countryList[i])
+        legend_elements.append(p)
+
     ax.legend(handles = legend_elements, bbox_to_anchor=(-0.3,1.2),loc = 'upper left')
 
 
--- a/VAP.xml	Tue Jul 10 09:22:53 2018 -0400
+++ b/VAP.xml	Wed Jul 11 08:58:14 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="VAPPER" name="VAPPER" version="1.0.0">
+<tool id="VAP" name="VAPPER" version="1.0.0">
     <description>is a Variant Antigen Profiler that accurately quantifies the variant antigen diversity or presence in a Trypanosoma congolense or T.vivax isolate</description>
 	<requirements>
         <requirement type="package" version="1.2.10">velvet</requirement>
@@ -7,6 +7,8 @@
         <requirement type="package" version="1.6">samtools</requirement>
         <requirement type="package" version="2.2.1">cufflinks</requirement>
         <requirement type="package" version="2.7.1">blast</requirement>
+		<requirement type="package" version="6.6.0.0">EMBOSS</requirement>
+		<requirement type="package" version="0.8.0">seaborn</requirement>
 	</requirements>
 
 
--- a/data/congodata.csv	Tue Jul 10 09:22:53 2018 -0400
+++ b/data/congodata.csv	Wed Jul 11 08:58:14 2018 -0400
@@ -1,1 +1,1 @@
-Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour
IL3578,0.06920904,0.050847458,0.039548023,0.012711864,0.066384181,0.13700565,0.103107345,0.005649718,0.019774011,0.035310734,0.107344633,0.076271186,0.080508475,0.049435028,0.146892655,Burkina Faso
IL2995,0.126126126,0.207207207,0.09009009,0.018018018,0.027027027,0.018018018,0.027027027,0,0.036036036,0.027027027,0.162162162,0.063063063,0.117117117,0.018018018,0.063063063,Burkina Faso
IL3897,0.120798319,0.108193277,0.085084034,0.011554622,0.050420168,0.053571429,0.06512605,0.015756303,0.013655462,0.028361345,0.125,0.05987395,0.066176471,0.037815126,0.158613445,Burkina Faso
BANAN CL2,0.153939394,0.164848485,0.128484848,0.019393939,0.029090909,0.042424242,0.015757576,0.012121212,0.020606061,0.03030303,0.155151515,0.043636364,0.073939394,0.032727273,0.077575758,Burkina Faso
DIND,0.158184319,0.132049519,0.104539202,0.020632737,0.081155433,0.022008253,0.041265475,0.011004127,0.011004127,0.041265475,0.166437414,0.04264099,0.072902338,0.031636864,0.063273728,Burkina Faso
KARAN,0.144676979,0.148316652,0.103730664,0.012738854,0.083712466,0.08189263,0.03366697,0.010009099,0.013648772,0.034576888,0.104640582,0.042766151,0.055505005,0.020018198,0.110100091,Burkina Faso
SA267,0.138941399,0.155954631,0.119092628,0.02173913,0.052930057,0.06710775,0.018903592,0.008506616,0.013232514,0.050094518,0.140831758,0.029300567,0.055765595,0.032136106,0.095463138,Burkina Faso
SA268,0.144965278,0.144097222,0.113715278,0.025173611,0.058159722,0.071180556,0.019097222,0.010416667,0.010416667,0.048611111,0.139756944,0.027777778,0.0625,0.030381944,0.09375,Burkina Faso
SA95-3308,0.171717172,0.161616162,0.123737374,0.016414141,0.035353535,0.039141414,0.012626263,0.01010101,0.017676768,0.037878788,0.148989899,0.034090909,0.070707071,0.021464646,0.098484848,Burkina Faso
ALME,0.105034722,0.1015625,0.085069444,0.010416667,0.084201389,0.092881944,0.053819444,0.015625,0.014756944,0.026041667,0.131076389,0.045138889,0.055555556,0.019965278,0.158854167,Cameroon
BEKA,0.135538954,0.141942369,0.108858058,0.013874066,0.059765208,0.069370331,0.022411953,0.016008538,0.01814301,0.037353255,0.140875133,0.037353255,0.060832444,0.023479189,0.114194237,Cameroon
KONT1/129,0.147275405,0.151693667,0.12371134,0.013254786,0.051546392,0.057437408,0.026509573,0.020618557,0.011782032,0.033873343,0.122238586,0.038291605,0.051546392,0.023564065,0.126656848,Cameroon
KONT2/133,0.13660619,0.132337247,0.102454642,0.011739594,0.065101387,0.075773746,0.032017076,0.005336179,0.013874066,0.048025614,0.134471718,0.037353255,0.057630736,0.024546425,0.122732124,Cameroon
KONT2/151,0.123529412,0.147058824,0.108235294,0.010588235,0.052941176,0.077647059,0.032941176,0.005882353,0.015294118,0.04,0.132941176,0.037647059,0.054117647,0.023529412,0.137647059,Cameroon
POUSS,0.108728943,0.113323124,0.105666156,0.018376723,0.061255743,0.079632466,0.045941807,0.009188361,0.007656968,0.026033691,0.127105666,0.062787136,0.055130168,0.018376723,0.160796325,Cameroon
DJUMA,0.101867572,0.118845501,0.071307301,0.010186757,0.032258065,0.03565365,0.100169779,0.008488964,0.01188455,0.0237691,0.130730051,0.071307301,0.049235993,0.030560272,0.203735144,Congo
MATADI,0.15625,0.151041667,0.090277778,0.017361111,0.105902778,0.027777778,0.017361111,0.008680556,0.015625,0.026041667,0.170138889,0.045138889,0.102430556,0.026041667,0.039930556,Congo
ZRE/AGRIUMBE G143 90,0.160377358,0.139622642,0.098113208,0.00754717,0.120754717,0.030188679,0.00754717,0.011320755,0.024528302,0.022641509,0.156603774,0.035849057,0.10754717,0.030188679,0.047169811,Congo
ZRE/NKUIYI G291 90,0.178509532,0.142114385,0.081455806,0.013864818,0.117850953,0.022530329,0.008665511,0.017331023,0.017331023,0.022530329,0.169844021,0.039861352,0.095320624,0.017331023,0.055459272,Congo
PAUWE73,0.119205298,0.138126774,0.090823084,0.006622517,0.063386944,0.071901608,0.028382214,0.008514664,0.010406812,0.028382214,0.141911069,0.041627247,0.071901608,0.017975402,0.160832545,Ethiopia
WETEJA F015,0.110922947,0.111769687,0.087214225,0.016934801,0.058425064,0.067739204,0.042337003,0.00592718,0.011007621,0.031329382,0.147332769,0.048264183,0.071972904,0.033022862,0.155800169,Ethiopia
YATU F187,0.150458716,0.118348624,0.093577982,0.022018349,0.055963303,0.066972477,0.026605505,0.009174312,0.017431193,0.035779817,0.153211009,0.046788991,0.062385321,0.032110092,0.109174312,Ethiopia
IL3900,0.147826087,0.135652174,0.116521739,0.022608696,0.076521739,0.036521739,0.029565217,0.005217391,0.027826087,0.046956522,0.173913043,0.050434783,0.076521739,0.034782609,0.019130435,Forest sub-type
IL3926,0.150234742,0.126760563,0.118935837,0.023474178,0.067292645,0.03286385,0.039123631,0.010954617,0.017214397,0.045383412,0.183098592,0.048513302,0.073552426,0.026604069,0.03599374,Forest sub-type
GUTR28,0.13996139,0.137065637,0.097490347,0.007722008,0.074324324,0.07046332,0.016409266,0.008687259,0.011583012,0.045366795,0.152509653,0.027992278,0.083976834,0.032818533,0.093629344,Gambia
GUTR37,0.124489796,0.134693878,0.096938776,0.013265306,0.083673469,0.079591837,0.032653061,0.012244898,0.01122449,0.035714286,0.120408163,0.030612245,0.06122449,0.030612245,0.132653061,Gambia
IL274,0.102671119,0.116026711,0.08263773,0.014190317,0.08096828,0.081803005,0.050918197,0.003338898,0.016694491,0.02754591,0.126043406,0.040901503,0.063439065,0.028380634,0.164440735,Kenya
IL2992,0.112690355,0.096446701,0.078172589,0.011167513,0.050761421,0.05786802,0.070050761,0.016243655,0.012182741,0.031472081,0.12893401,0.056852792,0.064974619,0.034517766,0.177664975,Kenya
IL3000,0.073317308,0.039663462,0.049278846,0.018028846,0.060096154,0.055288462,0.054086538,0.025240385,0.012019231,0.060096154,0.141826923,0.099759615,0.061298077,0.078125,0.171875,Kenya
IL3019,0.105315948,0.099297894,0.074222668,0.011033099,0.054162487,0.056168506,0.076228686,0.016048144,0.013039117,0.029087262,0.138415246,0.058174524,0.063189569,0.034102307,0.171514544,Kenya
IL3021,0.11167002,0.10362173,0.078470825,0.011066398,0.054325956,0.056338028,0.073440644,0.016096579,0.011066398,0.028169014,0.126760563,0.058350101,0.062374245,0.03722334,0.171026157,Kenya
IL3022,0.116596639,0.101890756,0.080882353,0.010504202,0.058823529,0.06092437,0.068277311,0.007352941,0.013655462,0.029411765,0.12394958,0.05987395,0.06197479,0.036764706,0.169117647,Kenya
IL3035,0.12183908,0.113409962,0.081226054,0.018390805,0.066666667,0.06743295,0.042145594,0.008429119,0.021455939,0.031417625,0.152490421,0.042145594,0.07816092,0.022222222,0.13256705,Kenya
IL3180,0.110629067,0.09978308,0.075921909,0.013015184,0.053145336,0.055314534,0.070498915,0.013015184,0.013015184,0.018438178,0.134490239,0.05856833,0.060737527,0.035791757,0.187635575,Kenya
IL3349,0.101861993,0.100766703,0.070098576,0.007667032,0.059145674,0.061336254,0.073384447,0.008762322,0.009857612,0.036144578,0.133625411,0.053669222,0.069003286,0.038335159,0.176341731,Kenya
IL374,0.135494597,0.119700748,0.087281796,0.013300083,0.074812968,0.078969244,0.044887781,0.006650042,0.015793849,0.024937656,0.128844555,0.036575229,0.057356608,0.023275145,0.152119701,Kenya
IL3775,0.07605985,0.074812968,0.069825436,0.012468828,0.058603491,0.063591022,0.089775561,0.004987531,0.016209476,0.036159601,0.137157107,0.067331671,0.064837905,0.038653367,0.189526185,Kenya
IL3779,0.089655172,0.062068966,0.034482759,0.034482759,0.051724138,0.05862069,0.106896552,0.017241379,0.013793103,0.048275862,0.134482759,0.068965517,0.055172414,0.04137931,0.182758621,Kenya
IL3932,0.064606742,0.06741573,0.073033708,0.014044944,0.095505618,0.075842697,0.081460674,0.014044944,0.02247191,0.019662921,0.123595506,0.073033708,0.039325843,0.033707865,0.202247191,Kenya
IL3949,0.12804878,0.130081301,0.099593496,0.017276423,0.039634146,0.043699187,0.050813008,0.012195122,0.011178862,0.037601626,0.150406504,0.041666667,0.073170732,0.028455285,0.136178862,Kenya
IL396,0.129508197,0.112295082,0.089344262,0.012295082,0.081147541,0.079508197,0.048360656,0.004098361,0.013114754,0.022131148,0.119672131,0.040163934,0.058196721,0.022131148,0.168032787,Kenya
IL3978,0.068055556,0.05,0.038888889,0.0125,0.065277778,0.072222222,0.088888889,0.005555556,0.019444444,0.034722222,0.161111111,0.075,0.080555556,0.048611111,0.179166667,Kenya
IL399,0.128314799,0.108639863,0.094952951,0.011120616,0.076133447,0.078699743,0.047904192,0.005988024,0.015397776,0.026518392,0.122326775,0.03849444,0.065012831,0.020530368,0.159965783,Kenya
IL409,0.122263748,0.114789108,0.089161773,0.010144154,0.07367859,0.068339562,0.055525894,0.005872931,0.013881474,0.027762947,0.121195942,0.044313935,0.061932728,0.025093433,0.16604378,Kenya
IL410,0.103556485,0.112970711,0.094142259,0.012552301,0.074267782,0.075313808,0.052301255,0.005230126,0.013598326,0.020920502,0.120292887,0.038702929,0.074267782,0.018828452,0.183054393,Kenya
IL438,0.09297725,0.091988131,0.050445104,0.014836795,0.098911968,0.097922849,0.055390702,0,0.014836795,0.03066271,0.139465875,0.043521266,0.070227498,0.029673591,0.169139466,Kenya
IL439,0.118078176,0.117263844,0.087947883,0.013029316,0.080618893,0.07980456,0.048045603,0.004071661,0.01465798,0.027687296,0.122149837,0.038273616,0.058631922,0.026872964,0.16286645,Kenya
ILC55,0.021834061,0.03930131,0.026200873,0.008733624,0.122270742,0.126637555,0.096069869,0,0.008733624,0.021834061,0.152838428,0.048034934,0.07860262,0.030567686,0.218340611,Kenya
ILC66,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Kenya
MALI/1312/95,0.131756757,0.132601351,0.086993243,0.01097973,0.091216216,0.096283784,0.032939189,0.005912162,0.014358108,0.03125,0.134290541,0.047297297,0.068412162,0.021959459,0.09375,Mali
MALI25239 B695,0.120362737,0.11788953,0.086562242,0.014014839,0.088211047,0.103874691,0.037098104,0.009892828,0.011541632,0.026380874,0.126133553,0.037922506,0.069249794,0.019785655,0.131079967,Mali
IL2281,0.1484375,0.150390625,0.107421875,0.016601563,0.065429688,0.067382813,0.012695313,0.008789063,0.017578125,0.032226563,0.153320313,0.032226563,0.071289063,0.028320313,0.087890625,Nigeria
IL3304,0.118333333,0.105,0.088333333,0.016666667,0.065,0.073333333,0.013333333,0.006666667,0.021666667,0.056666667,0.206666667,0.041666667,0.058333333,0.035,0.093333333,Nigeria
IL3954,0.138586957,0.116847826,0.08423913,0.024456522,0.076086957,0.08423913,0.020380435,0.00951087,0.017663043,0.036684783,0.141304348,0.043478261,0.080163043,0.028532609,0.097826087,Nigeria
IL1180,0.134306569,0.119708029,0.100729927,0.026277372,0.072992701,0.077372263,0.020437956,0.01459854,0.02189781,0.035036496,0.118248175,0.051094891,0.081751825,0.024817518,0.100729927,Tanzania
IL1769,0.092920354,0.097345133,0.081858407,0.022123894,0.050884956,0.037610619,0.077433628,0.013274336,0.019911504,0.026548673,0.128318584,0.055309735,0.084070796,0.030973451,0.181415929,Tanzania
IL2068,0.066460587,0.051004637,0.034003091,0.027820711,0.049459042,0.061823802,0.086553323,0.00309119,0.018547141,0.040185471,0.187017002,0.066460587,0.083462133,0.041731066,0.182380216,Tanzania
IL3296,0.075409836,0.068852459,0.055737705,0.006557377,0.06557377,0.078688525,0.032786885,0,0.029508197,0.02295082,0.226229508,0.062295082,0.101639344,0.02295082,0.150819672,Tanzania
IL3686,0.122362869,0.088607595,0.067510549,0.012658228,0.046413502,0.088607595,0.080168776,0.012658228,0.016877637,0.029535865,0.105485232,0.063291139,0.080168776,0.029535865,0.156118143,Tanzania
IL3688,0.117549669,0.098509934,0.071192053,0.017384106,0.052980132,0.052980132,0.072847682,0.007450331,0.013245033,0.038907285,0.139072848,0.053807947,0.067880795,0.02897351,0.167218543,Tanzania
ILC22,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Tanzania
IL311,0.073326249,0.078639745,0.060573858,0.018065887,0.111583422,0.106269926,0.036131775,0.004250797,0.015940489,0.052072264,0.151965994,0.044633369,0.078639745,0.044633369,0.123273114,The Gambia
IL3674,0.100110011,0.099009901,0.074807481,0.01650165,0.096809681,0.099009901,0.02970297,0.00770077,0.01650165,0.04950495,0.133113311,0.04620462,0.069306931,0.03960396,0.122112211,The Gambia
IL3675,0.117801047,0.107329843,0.098167539,0.014397906,0.096858639,0.085078534,0.030104712,0.007853403,0.018324607,0.034031414,0.113874346,0.041884817,0.077225131,0.02486911,0.132198953,The Gambia
TOGO222,0.136595311,0.142711519,0.111111111,0.013251784,0.062181448,0.069317023,0.026503568,0.01019368,0.019367992,0.0254842,0.133537207,0.039755352,0.060142712,0.013251784,0.136595311,Togo
TOGO2264,0.15092291,0.142236699,0.115092291,0.019543974,0.060803474,0.072747014,0.027144408,0.013029316,0.017372421,0.049945711,0.143322476,0.030401737,0.064060803,0.021715527,0.071661238,Togo
IL2326,0.06323185,0.046838407,0.018735363,0.030444965,0.035128806,0.058548009,0.098360656,0.007025761,0.009367681,0.037470726,0.18969555,0.074941452,0.100702576,0.044496487,0.18501171,Uganda
IL588,0.097727273,0.079545455,0.029545455,0.006818182,0.081818182,0.097727273,0.045454545,0,0.009090909,0.045454545,0.156818182,0.043181818,0.052272727,0.045454545,0.209090909,Uganda
EATRO1157C2,0.116544417,0.122249389,0.08394458,0.011409943,0.084759576,0.076609617,0.027709861,0.007334963,0.009779951,0.023634882,0.141809291,0.049714751,0.071719641,0.022819886,0.14995925,Uganda
ALICK 339 C6,0.085393258,0.116853933,0.083146067,0.011235955,0.051685393,0.049438202,0.076404494,0.008988764,0.004494382,0.02247191,0.157303371,0.065168539,0.047191011,0.026966292,0.193258427,Zambia
CHIPOPELA 313,0.111924686,0.118200837,0.087866109,0.014644351,0.038702929,0.050209205,0.067991632,0.008368201,0.017782427,0.018828452,0.148535565,0.04916318,0.075313808,0.035564854,0.156903766,Zambia
J4J4,0.108593012,0.098205855,0.074598678,0.013220019,0.06421152,0.065155807,0.057601511,0.005665722,0.010387158,0.028328612,0.144475921,0.051935788,0.07082153,0.030217186,0.176581681,Zambia
KAPEVE 27 PC2,0.155945419,0.155945419,0.111111111,0.011695906,0.044834308,0.048732943,0.013645224,0.007797271,0.007797271,0.035087719,0.152046784,0.052631579,0.066276803,0.031189084,0.105263158,Zambia
KAPEYA 357,0.12372449,0.116071429,0.099489796,0.021683673,0.053571429,0.056122449,0.052295918,0.011479592,0.019132653,0.028061224,0.154336735,0.044642857,0.070153061,0.035714286,0.113520408,Zambia
KASANDA 20 C4,0.149230769,0.138461538,0.101538462,0.012307692,0.024615385,0.04,0.046153846,0.015384615,0.009230769,0.035384615,0.135384615,0.053846154,0.067692308,0.036923077,0.133846154,Zambia
LOMBO 3020 C1,0.118120805,0.11409396,0.11409396,0.020134228,0.059060403,0.056375839,0.026845638,0.010738255,0.020134228,0.037583893,0.190604027,0.053691275,0.069798658,0.028187919,0.080536913,Zambia
MPHITA 4028 C1,0.12173913,0.130434783,0.092173913,0.012173913,0.04,0.046956522,0.026086957,0.006956522,0.012173913,0.027826087,0.166956522,0.050434783,0.074782609,0.029565217,0.16173913,Zambia
MSORO M19 C1,0.130580357,0.146205357,0.103794643,0.013392857,0.041294643,0.042410714,0.056919643,0.015625,0.018973214,0.017857143,0.131696429,0.0390625,0.060267857,0.033482143,0.1484375,Zambia
MSOSORO M7 C1,0.117091596,0.118035883,0.090651558,0.023607177,0.039660057,0.044381492,0.065155807,0.007554297,0.017941454,0.033994334,0.153918791,0.043437205,0.079320113,0.031161473,0.134088763,Zambia
TRT1,0.136406397,0.127939793,0.096895579,0.013170273,0.068673565,0.075258702,0.021636877,0.008466604,0.016933208,0.030103481,0.139228598,0.043273754,0.0724365,0.022577611,0.126999059,Zambia
TRT12,0.158751696,0.160108548,0.101763908,0.018995929,0.016282225,0.021709634,0.024423338,0.008141113,0.020352782,0.023066486,0.162822252,0.036635007,0.090909091,0.03256445,0.123473541,Zambia
TRT15,0.145992366,0.131679389,0.10019084,0.013358779,0.063931298,0.06870229,0.020038168,0.008587786,0.017175573,0.033396947,0.140267176,0.041984733,0.078244275,0.022900763,0.113549618,Zambia
TRT17C1,0.118181818,0.100909091,0.079090909,0.02,0.072727273,0.082727273,0.034545455,0.01,0.018181818,0.024545455,0.181818182,0.05,0.078181818,0.025454545,0.103636364,Zambia
TRT21,0.177272727,0.152272727,0.109090909,0.029545455,0.040909091,0.047727273,0.045454545,0.020454545,0.013636364,0.025,0.125,0.040909091,0.056818182,0.011363636,0.104545455,Zambia
TRT25,0.153846154,0.142389525,0.093289689,0.034369885,0.034369885,0.031096563,0.036006547,0.024549918,0.016366612,0.037643208,0.166939444,0.049099836,0.065466448,0.026186579,0.088379705,Zambia
TRT37,0.136701337,0.138187221,0.111441308,0.013372957,0.059435364,0.059435364,0.016344725,0.010401189,0.020802377,0.019316493,0.151560178,0.043090639,0.08320951,0.017830609,0.118870728,Zambia
TRT38,0.128583129,0.108927109,0.09009009,0.012285012,0.058968059,0.063882064,0.058149058,0.006552007,0.016380016,0.026208026,0.162162162,0.053235053,0.074529075,0.022932023,0.117117117,Zambia
TRT42,0.089041096,0.095890411,0.089041096,0.022260274,0.068493151,0.061643836,0.058219178,0.008561644,0.008561644,0.02739726,0.131849315,0.066780822,0.070205479,0.015410959,0.186643836,Zambia
TRT44,0.157681941,0.144204852,0.106469003,0.010781671,0.032345013,0.035040431,0.022911051,0.008086253,0.016172507,0.030997305,0.148247978,0.04851752,0.082210243,0.014824798,0.141509434,Zambia
TRT46,0.133779264,0.132664437,0.105908584,0.013377926,0.046822742,0.053511706,0.045707915,0.00780379,0.015607581,0.022296544,0.151616499,0.04793757,0.086956522,0.028985507,0.107023411,Zambia
TRT54,0.141007194,0.142446043,0.110791367,0.018705036,0.024460432,0.031654676,0.017266187,0.008633094,0.020143885,0.023021583,0.168345324,0.041726619,0.089208633,0.041726619,0.120863309,Zambia
TRT573R,0.135185185,0.155555556,0.111111111,0.011111111,0.022222222,0.02037037,0.012962963,0.011111111,0.016666667,0.022222222,0.161111111,0.042592593,0.096296296,0.033333333,0.148148148,Zambia
TRT59,0.117391304,0.156521739,0.104347826,0.013043478,0.004347826,0.013043478,0.02173913,0.013043478,0.004347826,0.008695652,0.147826087,0.047826087,0.117391304,0.013043478,0.217391304,Zambia
TRT61,0.151855047,0.134598792,0.104400345,0.012942192,0.059534081,0.055220017,0.030198447,0.011216566,0.017256255,0.028472821,0.146678171,0.038826575,0.062122519,0.028472821,0.118205349,Zambia
YOBO 2007 C2,0.10994152,0.123976608,0.092397661,0.01871345,0.045614035,0.045614035,0.045614035,0.007017544,0.01754386,0.031578947,0.18245614,0.057309942,0.085380117,0.031578947,0.105263158,Zambia
YOBO 2038 C2,0.132764921,0.118148599,0.09500609,0.013398295,0.063337393,0.054811206,0.029232643,0.009744214,0.018270402,0.037758831,0.180267966,0.040194884,0.071863581,0.020706456,0.114494519,Zambia
\ No newline at end of file
+Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour
IL3578,0.06920904,0.050847458,0.039548023,0.012711864,0.066384181,0.13700565,0.103107345,0.005649718,0.019774011,0.035310734,0.107344633,0.076271186,0.080508475,0.049435028,0.146892655,Burkina Faso
IL2995,0.126126126,0.207207207,0.09009009,0.018018018,0.027027027,0.018018018,0.027027027,0,0.036036036,0.027027027,0.162162162,0.063063063,0.117117117,0.018018018,0.063063063,Burkina Faso
IL3897,0.120798319,0.108193277,0.085084034,0.011554622,0.050420168,0.053571429,0.06512605,0.015756303,0.013655462,0.028361345,0.125,0.05987395,0.066176471,0.037815126,0.158613445,Burkina Faso
BANAN CL2,0.153939394,0.164848485,0.128484848,0.019393939,0.029090909,0.042424242,0.015757576,0.012121212,0.020606061,0.03030303,0.155151515,0.043636364,0.073939394,0.032727273,0.077575758,Burkina Faso
KARAN,0.144676979,0.148316652,0.103730664,0.012738854,0.083712466,0.08189263,0.03366697,0.010009099,0.013648772,0.034576888,0.104640582,0.042766151,0.055505005,0.020018198,0.110100091,Burkina Faso
SA267,0.138941399,0.155954631,0.119092628,0.02173913,0.052930057,0.06710775,0.018903592,0.008506616,0.013232514,0.050094518,0.140831758,0.029300567,0.055765595,0.032136106,0.095463138,Burkina Faso
SA268,0.144965278,0.144097222,0.113715278,0.025173611,0.058159722,0.071180556,0.019097222,0.010416667,0.010416667,0.048611111,0.139756944,0.027777778,0.0625,0.030381944,0.09375,Burkina Faso
SA95-3308,0.171717172,0.161616162,0.123737374,0.016414141,0.035353535,0.039141414,0.012626263,0.01010101,0.017676768,0.037878788,0.148989899,0.034090909,0.070707071,0.021464646,0.098484848,Burkina Faso
DIND,0.158184319,0.132049519,0.104539202,0.020632737,0.081155433,0.022008253,0.041265475,0.011004127,0.011004127,0.041265475,0.166437414,0.04264099,0.072902338,0.031636864,0.063273728,Burkina Faso - Forest sub-type
IL3900,0.147826087,0.135652174,0.116521739,0.022608696,0.076521739,0.036521739,0.029565217,0.005217391,0.027826087,0.046956522,0.173913043,0.050434783,0.076521739,0.034782609,0.019130435,Burkina Faso - Forest sub-type
IL3926,0.150234742,0.126760563,0.118935837,0.023474178,0.067292645,0.03286385,0.039123631,0.010954617,0.017214397,0.045383412,0.183098592,0.048513302,0.073552426,0.026604069,0.03599374,Burkina Faso - Forest sub-type
ALME,0.105034722,0.1015625,0.085069444,0.010416667,0.084201389,0.092881944,0.053819444,0.015625,0.014756944,0.026041667,0.131076389,0.045138889,0.055555556,0.019965278,0.158854167,Cameroon
BEKA,0.135538954,0.141942369,0.108858058,0.013874066,0.059765208,0.069370331,0.022411953,0.016008538,0.01814301,0.037353255,0.140875133,0.037353255,0.060832444,0.023479189,0.114194237,Cameroon
KONT1/129,0.147275405,0.151693667,0.12371134,0.013254786,0.051546392,0.057437408,0.026509573,0.020618557,0.011782032,0.033873343,0.122238586,0.038291605,0.051546392,0.023564065,0.126656848,Cameroon
KONT2/133,0.13660619,0.132337247,0.102454642,0.011739594,0.065101387,0.075773746,0.032017076,0.005336179,0.013874066,0.048025614,0.134471718,0.037353255,0.057630736,0.024546425,0.122732124,Cameroon
KONT2/151,0.123529412,0.147058824,0.108235294,0.010588235,0.052941176,0.077647059,0.032941176,0.005882353,0.015294118,0.04,0.132941176,0.037647059,0.054117647,0.023529412,0.137647059,Cameroon
POUSS,0.108728943,0.113323124,0.105666156,0.018376723,0.061255743,0.079632466,0.045941807,0.009188361,0.007656968,0.026033691,0.127105666,0.062787136,0.055130168,0.018376723,0.160796325,Cameroon
DJUMA,0.101867572,0.118845501,0.071307301,0.010186757,0.032258065,0.03565365,0.100169779,0.008488964,0.01188455,0.0237691,0.130730051,0.071307301,0.049235993,0.030560272,0.203735144,Congo
MATADI,0.15625,0.151041667,0.090277778,0.017361111,0.105902778,0.027777778,0.017361111,0.008680556,0.015625,0.026041667,0.170138889,0.045138889,0.102430556,0.026041667,0.039930556,Congo - Forest sub-type
ZRE/AGRIUMBE G143 90,0.160377358,0.139622642,0.098113208,0.00754717,0.120754717,0.030188679,0.00754717,0.011320755,0.024528302,0.022641509,0.156603774,0.035849057,0.10754717,0.030188679,0.047169811,Congo - Forest sub-type
ZRE/NKUIYI G291 90,0.178509532,0.142114385,0.081455806,0.013864818,0.117850953,0.022530329,0.008665511,0.017331023,0.017331023,0.022530329,0.169844021,0.039861352,0.095320624,0.017331023,0.055459272,Congo - Forest sub-type
PAUWE73,0.119205298,0.138126774,0.090823084,0.006622517,0.063386944,0.071901608,0.028382214,0.008514664,0.010406812,0.028382214,0.141911069,0.041627247,0.071901608,0.017975402,0.160832545,Ethiopia
WETEJA F015,0.110922947,0.111769687,0.087214225,0.016934801,0.058425064,0.067739204,0.042337003,0.00592718,0.011007621,0.031329382,0.147332769,0.048264183,0.071972904,0.033022862,0.155800169,Ethiopia
YATU F187,0.150458716,0.118348624,0.093577982,0.022018349,0.055963303,0.066972477,0.026605505,0.009174312,0.017431193,0.035779817,0.153211009,0.046788991,0.062385321,0.032110092,0.109174312,Ethiopia
GUTR28,0.13996139,0.137065637,0.097490347,0.007722008,0.074324324,0.07046332,0.016409266,0.008687259,0.011583012,0.045366795,0.152509653,0.027992278,0.083976834,0.032818533,0.093629344,Gambia
GUTR37,0.124489796,0.134693878,0.096938776,0.013265306,0.083673469,0.079591837,0.032653061,0.012244898,0.01122449,0.035714286,0.120408163,0.030612245,0.06122449,0.030612245,0.132653061,Gambia
IL311,0.073326249,0.078639745,0.060573858,0.018065887,0.111583422,0.106269926,0.036131775,0.004250797,0.015940489,0.052072264,0.151965994,0.044633369,0.078639745,0.044633369,0.123273114,Gambia
IL3674,0.100110011,0.099009901,0.074807481,0.01650165,0.096809681,0.099009901,0.02970297,0.00770077,0.01650165,0.04950495,0.133113311,0.04620462,0.069306931,0.03960396,0.122112211,Gambia
IL3675,0.117801047,0.107329843,0.098167539,0.014397906,0.096858639,0.085078534,0.030104712,0.007853403,0.018324607,0.034031414,0.113874346,0.041884817,0.077225131,0.02486911,0.132198953,Gambia
IL274,0.102671119,0.116026711,0.08263773,0.014190317,0.08096828,0.081803005,0.050918197,0.003338898,0.016694491,0.02754591,0.126043406,0.040901503,0.063439065,0.028380634,0.164440735,Kenya
IL2992,0.112690355,0.096446701,0.078172589,0.011167513,0.050761421,0.05786802,0.070050761,0.016243655,0.012182741,0.031472081,0.12893401,0.056852792,0.064974619,0.034517766,0.177664975,Kenya
IL3000,0.073317308,0.039663462,0.049278846,0.018028846,0.060096154,0.055288462,0.054086538,0.025240385,0.012019231,0.060096154,0.141826923,0.099759615,0.061298077,0.078125,0.171875,Kenya
IL3019,0.105315948,0.099297894,0.074222668,0.011033099,0.054162487,0.056168506,0.076228686,0.016048144,0.013039117,0.029087262,0.138415246,0.058174524,0.063189569,0.034102307,0.171514544,Kenya
IL3021,0.11167002,0.10362173,0.078470825,0.011066398,0.054325956,0.056338028,0.073440644,0.016096579,0.011066398,0.028169014,0.126760563,0.058350101,0.062374245,0.03722334,0.171026157,Kenya
IL3022,0.116596639,0.101890756,0.080882353,0.010504202,0.058823529,0.06092437,0.068277311,0.007352941,0.013655462,0.029411765,0.12394958,0.05987395,0.06197479,0.036764706,0.169117647,Kenya
IL3035,0.12183908,0.113409962,0.081226054,0.018390805,0.066666667,0.06743295,0.042145594,0.008429119,0.021455939,0.031417625,0.152490421,0.042145594,0.07816092,0.022222222,0.13256705,Kenya
IL3180,0.110629067,0.09978308,0.075921909,0.013015184,0.053145336,0.055314534,0.070498915,0.013015184,0.013015184,0.018438178,0.134490239,0.05856833,0.060737527,0.035791757,0.187635575,Kenya
IL3349,0.101861993,0.100766703,0.070098576,0.007667032,0.059145674,0.061336254,0.073384447,0.008762322,0.009857612,0.036144578,0.133625411,0.053669222,0.069003286,0.038335159,0.176341731,Kenya
IL374,0.135494597,0.119700748,0.087281796,0.013300083,0.074812968,0.078969244,0.044887781,0.006650042,0.015793849,0.024937656,0.128844555,0.036575229,0.057356608,0.023275145,0.152119701,Kenya
IL3775,0.07605985,0.074812968,0.069825436,0.012468828,0.058603491,0.063591022,0.089775561,0.004987531,0.016209476,0.036159601,0.137157107,0.067331671,0.064837905,0.038653367,0.189526185,Kenya
IL3779,0.089655172,0.062068966,0.034482759,0.034482759,0.051724138,0.05862069,0.106896552,0.017241379,0.013793103,0.048275862,0.134482759,0.068965517,0.055172414,0.04137931,0.182758621,Kenya
IL3932,0.064606742,0.06741573,0.073033708,0.014044944,0.095505618,0.075842697,0.081460674,0.014044944,0.02247191,0.019662921,0.123595506,0.073033708,0.039325843,0.033707865,0.202247191,Kenya
IL3949,0.12804878,0.130081301,0.099593496,0.017276423,0.039634146,0.043699187,0.050813008,0.012195122,0.011178862,0.037601626,0.150406504,0.041666667,0.073170732,0.028455285,0.136178862,Kenya
IL396,0.129508197,0.112295082,0.089344262,0.012295082,0.081147541,0.079508197,0.048360656,0.004098361,0.013114754,0.022131148,0.119672131,0.040163934,0.058196721,0.022131148,0.168032787,Kenya
IL3978,0.068055556,0.05,0.038888889,0.0125,0.065277778,0.072222222,0.088888889,0.005555556,0.019444444,0.034722222,0.161111111,0.075,0.080555556,0.048611111,0.179166667,Kenya
IL399,0.128314799,0.108639863,0.094952951,0.011120616,0.076133447,0.078699743,0.047904192,0.005988024,0.015397776,0.026518392,0.122326775,0.03849444,0.065012831,0.020530368,0.159965783,Kenya
IL409,0.122263748,0.114789108,0.089161773,0.010144154,0.07367859,0.068339562,0.055525894,0.005872931,0.013881474,0.027762947,0.121195942,0.044313935,0.061932728,0.025093433,0.16604378,Kenya
IL410,0.103556485,0.112970711,0.094142259,0.012552301,0.074267782,0.075313808,0.052301255,0.005230126,0.013598326,0.020920502,0.120292887,0.038702929,0.074267782,0.018828452,0.183054393,Kenya
IL438,0.09297725,0.091988131,0.050445104,0.014836795,0.098911968,0.097922849,0.055390702,0,0.014836795,0.03066271,0.139465875,0.043521266,0.070227498,0.029673591,0.169139466,Kenya
IL439,0.118078176,0.117263844,0.087947883,0.013029316,0.080618893,0.07980456,0.048045603,0.004071661,0.01465798,0.027687296,0.122149837,0.038273616,0.058631922,0.026872964,0.16286645,Kenya
ILC55,0.021834061,0.03930131,0.026200873,0.008733624,0.122270742,0.126637555,0.096069869,0,0.008733624,0.021834061,0.152838428,0.048034934,0.07860262,0.030567686,0.218340611,Kenya
ILC66,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Kenya
MALI/1312/95,0.131756757,0.132601351,0.086993243,0.01097973,0.091216216,0.096283784,0.032939189,0.005912162,0.014358108,0.03125,0.134290541,0.047297297,0.068412162,0.021959459,0.09375,Mali
MALI25239 B695,0.120362737,0.11788953,0.086562242,0.014014839,0.088211047,0.103874691,0.037098104,0.009892828,0.011541632,0.026380874,0.126133553,0.037922506,0.069249794,0.019785655,0.131079967,Mali
IL2281,0.1484375,0.150390625,0.107421875,0.016601563,0.065429688,0.067382813,0.012695313,0.008789063,0.017578125,0.032226563,0.153320313,0.032226563,0.071289063,0.028320313,0.087890625,Nigeria
IL3304,0.118333333,0.105,0.088333333,0.016666667,0.065,0.073333333,0.013333333,0.006666667,0.021666667,0.056666667,0.206666667,0.041666667,0.058333333,0.035,0.093333333,Nigeria
IL3954,0.138586957,0.116847826,0.08423913,0.024456522,0.076086957,0.08423913,0.020380435,0.00951087,0.017663043,0.036684783,0.141304348,0.043478261,0.080163043,0.028532609,0.097826087,Nigeria
Tc1/148,0.121089808,0.07568113,0.040363269,0.010090817,0.016145308,0.014127144,0.127144299,0.005045409,0.013118063,0.030272452,0.1160444,0.135216953,0.089808274,0.056508577,0.149344097,Nigeria
IL1180,0.134306569,0.119708029,0.100729927,0.026277372,0.072992701,0.077372263,0.020437956,0.01459854,0.02189781,0.035036496,0.118248175,0.051094891,0.081751825,0.024817518,0.100729927,Tanzania
IL1769,0.092920354,0.097345133,0.081858407,0.022123894,0.050884956,0.037610619,0.077433628,0.013274336,0.019911504,0.026548673,0.128318584,0.055309735,0.084070796,0.030973451,0.181415929,Tanzania
IL2068,0.066460587,0.051004637,0.034003091,0.027820711,0.049459042,0.061823802,0.086553323,0.00309119,0.018547141,0.040185471,0.187017002,0.066460587,0.083462133,0.041731066,0.182380216,Tanzania
IL3296,0.075409836,0.068852459,0.055737705,0.006557377,0.06557377,0.078688525,0.032786885,0,0.029508197,0.02295082,0.226229508,0.062295082,0.101639344,0.02295082,0.150819672,Tanzania
IL3686,0.122362869,0.088607595,0.067510549,0.012658228,0.046413502,0.088607595,0.080168776,0.012658228,0.016877637,0.029535865,0.105485232,0.063291139,0.080168776,0.029535865,0.156118143,Tanzania
IL3688,0.117549669,0.098509934,0.071192053,0.017384106,0.052980132,0.052980132,0.072847682,0.007450331,0.013245033,0.038907285,0.139072848,0.053807947,0.067880795,0.02897351,0.167218543,Tanzania
ILC22,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Tanzania
TOGO222,0.136595311,0.142711519,0.111111111,0.013251784,0.062181448,0.069317023,0.026503568,0.01019368,0.019367992,0.0254842,0.133537207,0.039755352,0.060142712,0.013251784,0.136595311,Togo
TOGO2264,0.15092291,0.142236699,0.115092291,0.019543974,0.060803474,0.072747014,0.027144408,0.013029316,0.017372421,0.049945711,0.143322476,0.030401737,0.064060803,0.021715527,0.071661238,Togo
IL2326,0.06323185,0.046838407,0.018735363,0.030444965,0.035128806,0.058548009,0.098360656,0.007025761,0.009367681,0.037470726,0.18969555,0.074941452,0.100702576,0.044496487,0.18501171,Uganda
IL588,0.097727273,0.079545455,0.029545455,0.006818182,0.081818182,0.097727273,0.045454545,0,0.009090909,0.045454545,0.156818182,0.043181818,0.052272727,0.045454545,0.209090909,Uganda
EATRO1157C2,0.116544417,0.122249389,0.08394458,0.011409943,0.084759576,0.076609617,0.027709861,0.007334963,0.009779951,0.023634882,0.141809291,0.049714751,0.071719641,0.022819886,0.14995925,Uganda
ALICK 339 C6,0.085393258,0.116853933,0.083146067,0.011235955,0.051685393,0.049438202,0.076404494,0.008988764,0.004494382,0.02247191,0.157303371,0.065168539,0.047191011,0.026966292,0.193258427,Zambia
CHIPOPELA 313,0.111924686,0.118200837,0.087866109,0.014644351,0.038702929,0.050209205,0.067991632,0.008368201,0.017782427,0.018828452,0.148535565,0.04916318,0.075313808,0.035564854,0.156903766,Zambia
J4J4,0.108593012,0.098205855,0.074598678,0.013220019,0.06421152,0.065155807,0.057601511,0.005665722,0.010387158,0.028328612,0.144475921,0.051935788,0.07082153,0.030217186,0.176581681,Zambia
KAPEVE 27 PC2,0.155945419,0.155945419,0.111111111,0.011695906,0.044834308,0.048732943,0.013645224,0.007797271,0.007797271,0.035087719,0.152046784,0.052631579,0.066276803,0.031189084,0.105263158,Zambia
KAPEYA 357,0.12372449,0.116071429,0.099489796,0.021683673,0.053571429,0.056122449,0.052295918,0.011479592,0.019132653,0.028061224,0.154336735,0.044642857,0.070153061,0.035714286,0.113520408,Zambia
KASANDA 20 C4,0.149230769,0.138461538,0.101538462,0.012307692,0.024615385,0.04,0.046153846,0.015384615,0.009230769,0.035384615,0.135384615,0.053846154,0.067692308,0.036923077,0.133846154,Zambia
LOMBO 3020 C1,0.118120805,0.11409396,0.11409396,0.020134228,0.059060403,0.056375839,0.026845638,0.010738255,0.020134228,0.037583893,0.190604027,0.053691275,0.069798658,0.028187919,0.080536913,Zambia
MPHITA 4028 C1,0.12173913,0.130434783,0.092173913,0.012173913,0.04,0.046956522,0.026086957,0.006956522,0.012173913,0.027826087,0.166956522,0.050434783,0.074782609,0.029565217,0.16173913,Zambia
MSORO M19 C1,0.130580357,0.146205357,0.103794643,0.013392857,0.041294643,0.042410714,0.056919643,0.015625,0.018973214,0.017857143,0.131696429,0.0390625,0.060267857,0.033482143,0.1484375,Zambia
MSOSORO M7 C1,0.117091596,0.118035883,0.090651558,0.023607177,0.039660057,0.044381492,0.065155807,0.007554297,0.017941454,0.033994334,0.153918791,0.043437205,0.079320113,0.031161473,0.134088763,Zambia
TRT1,0.136406397,0.127939793,0.096895579,0.013170273,0.068673565,0.075258702,0.021636877,0.008466604,0.016933208,0.030103481,0.139228598,0.043273754,0.0724365,0.022577611,0.126999059,Zambia
TRT12,0.158751696,0.160108548,0.101763908,0.018995929,0.016282225,0.021709634,0.024423338,0.008141113,0.020352782,0.023066486,0.162822252,0.036635007,0.090909091,0.03256445,0.123473541,Zambia
TRT15,0.145992366,0.131679389,0.10019084,0.013358779,0.063931298,0.06870229,0.020038168,0.008587786,0.017175573,0.033396947,0.140267176,0.041984733,0.078244275,0.022900763,0.113549618,Zambia
TRT17C1,0.118181818,0.100909091,0.079090909,0.02,0.072727273,0.082727273,0.034545455,0.01,0.018181818,0.024545455,0.181818182,0.05,0.078181818,0.025454545,0.103636364,Zambia
TRT21,0.177272727,0.152272727,0.109090909,0.029545455,0.040909091,0.047727273,0.045454545,0.020454545,0.013636364,0.025,0.125,0.040909091,0.056818182,0.011363636,0.104545455,Zambia
TRT25,0.153846154,0.142389525,0.093289689,0.034369885,0.034369885,0.031096563,0.036006547,0.024549918,0.016366612,0.037643208,0.166939444,0.049099836,0.065466448,0.026186579,0.088379705,Zambia
TRT37,0.136701337,0.138187221,0.111441308,0.013372957,0.059435364,0.059435364,0.016344725,0.010401189,0.020802377,0.019316493,0.151560178,0.043090639,0.08320951,0.017830609,0.118870728,Zambia
TRT38,0.128583129,0.108927109,0.09009009,0.012285012,0.058968059,0.063882064,0.058149058,0.006552007,0.016380016,0.026208026,0.162162162,0.053235053,0.074529075,0.022932023,0.117117117,Zambia
TRT42,0.089041096,0.095890411,0.089041096,0.022260274,0.068493151,0.061643836,0.058219178,0.008561644,0.008561644,0.02739726,0.131849315,0.066780822,0.070205479,0.015410959,0.186643836,Zambia
TRT44,0.157681941,0.144204852,0.106469003,0.010781671,0.032345013,0.035040431,0.022911051,0.008086253,0.016172507,0.030997305,0.148247978,0.04851752,0.082210243,0.014824798,0.141509434,Zambia
TRT46,0.133779264,0.132664437,0.105908584,0.013377926,0.046822742,0.053511706,0.045707915,0.00780379,0.015607581,0.022296544,0.151616499,0.04793757,0.086956522,0.028985507,0.107023411,Zambia
TRT54,0.141007194,0.142446043,0.110791367,0.018705036,0.024460432,0.031654676,0.017266187,0.008633094,0.020143885,0.023021583,0.168345324,0.041726619,0.089208633,0.041726619,0.120863309,Zambia
TRT573R,0.135185185,0.155555556,0.111111111,0.011111111,0.022222222,0.02037037,0.012962963,0.011111111,0.016666667,0.022222222,0.161111111,0.042592593,0.096296296,0.033333333,0.148148148,Zambia
TRT59,0.117391304,0.156521739,0.104347826,0.013043478,0.004347826,0.013043478,0.02173913,0.013043478,0.004347826,0.008695652,0.147826087,0.047826087,0.117391304,0.013043478,0.217391304,Zambia
TRT61,0.151855047,0.134598792,0.104400345,0.012942192,0.059534081,0.055220017,0.030198447,0.011216566,0.017256255,0.028472821,0.146678171,0.038826575,0.062122519,0.028472821,0.118205349,Zambia
YOBO 2007 C2,0.10994152,0.123976608,0.092397661,0.01871345,0.045614035,0.045614035,0.045614035,0.007017544,0.01754386,0.031578947,0.18245614,0.057309942,0.085380117,0.031578947,0.105263158,Zambia
YOBO 2038 C2,0.132764921,0.118148599,0.09500609,0.013398295,0.063337393,0.054811206,0.029232643,0.009744214,0.018270402,0.037758831,0.180267966,0.040194884,0.071863581,0.020706456,0.114494519,Zambia
\ No newline at end of file
--- a/data/congodata_deviationfromthemean.csv	Tue Jul 10 09:22:53 2018 -0400
+++ b/data/congodata_deviationfromthemean.csv	Wed Jul 11 08:58:14 2018 -0400
@@ -1,1 +1,1 @@
-Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour
IL2995,-0.019637186,-0.108350357,-0.01512639,-0.002392738,0.041261003,0.052742362,0.030150623,0.00831415,-0.019757856,0.006440593,-0.020610832,-0.010139913,-0.046085817,0.014763942,0.088528327,Burkina Faso
IL3578,0.0372799,0.048009392,0.035415677,0.002913416,0.001903849,-0.06624527,-0.045929695,0.002664432,-0.003495831,-0.001843114,0.034206697,-0.023348036,-0.009477175,-0.016653068,0.004698735,Burkina Faso
IL3897,-0.014309379,-0.009336427,-0.010120334,0.004070658,0.017867862,0.017188951,-0.0079484,-0.007442153,0.002622718,0.005106275,0.01655133,-0.0069508,0.004854829,-0.005033166,-0.007022055,Burkina Faso
IL3900,-0.041337147,-0.036795324,-0.041558039,-0.006983416,-0.008233709,0.034238641,0.027612433,0.003096759,-0.011547907,-0.013488902,-0.032361713,0.002488367,-0.005490439,-0.002000649,0.132460955,Forest sub-type
IL3926,-0.043745802,-0.027903713,-0.043972137,-0.007848898,0.000995385,0.03789653,0.018054019,-0.002640467,-0.000936217,-0.011915792,-0.041547262,0.004409848,-0.002521126,0.006177891,0.11559765,Forest sub-type
IL3932,0.041882198,0.03144112,0.001929992,0.001580336,-0.027217588,-0.005082317,-0.024283024,-0.005730794,-0.00619373,0.013804699,0.017955824,-0.020110558,0.031705457,-0.000925905,-0.050655801,Kenya
IL274,0.003817821,-0.017169861,-0.00767403,0.001434963,-0.01268025,-0.011042625,0.006259453,0.004975252,-0.000416311,0.00592171,0.015507924,0.012021647,0.007592235,0.004401326,-0.012849345,Kenya
IL374,-0.029005657,-0.020843898,-0.012318096,0.002325197,-0.006524938,-0.008208864,0.012289869,0.001664108,0.000484331,0.008529964,0.012706775,0.016347921,0.013674692,0.009506815,-0.000528311,Kenya
IL396,-0.023019257,-0.013438232,-0.014380562,0.003330198,-0.012859511,-0.008747817,0.008816994,0.004215789,0.003163426,0.011336472,0.021879199,0.012759216,0.012834579,0.010650812,-0.016441397,Kenya
IL399,-0.021825859,-0.009783013,-0.019989251,0.004504664,-0.007845417,-0.007939363,0.009273458,0.002326126,0.000880404,0.006949228,0.019224555,0.01442871,0.006018469,0.012251592,-0.008374393,Kenya
IL409,-0.015774808,-0.015932258,-0.014198073,0.005481126,-0.00539056,0.002420818,0.001651756,0.002441219,0.002396706,0.005704673,0.020355388,0.008609215,0.009098572,0.007688527,-0.01445239,Kenya
IL410,0.002932455,-0.014113861,-0.019178559,0.003072979,-0.005979752,-0.004553428,0.004876395,0.003084024,0.002679854,0.012547118,0.021258443,0.014220221,-0.003236482,0.013953508,-0.031463003,Kenya
IL438,0.01351169,0.006868719,0.024518596,0.000788485,-0.030623938,-0.027162469,0.001786948,0.00831415,0.001441385,0.00280491,0.002085455,0.009401884,0.000803802,0.003108369,-0.017548076,Kenya
IL439,-0.011589236,-0.018406994,-0.012984183,0.002595964,-0.012330863,-0.00904418,0.009132047,0.004242489,0.0016202,0.005780324,0.019401493,0.014649534,0.012399378,0.005908996,-0.01127506,Kenya
ILC66,-0.022971641,-0.022304976,-0.022131736,0.003177147,-0.007230642,-0.00143879,0.010704621,1.53948E-05,0.004659923,0.00940123,0.019559629,0.015578752,0.005471134,0.012864948,-0.005255083,Kenya
IL3035,-0.01535014,-0.014553112,-0.006262354,-0.002765525,0.001621363,0.00332743,0.015032056,-0.000114969,-0.005177759,0.002049995,-0.010939091,0.010777556,-0.00712962,0.010559738,0.01902434,Kenya
ILC55,0.084654879,0.05955554,0.048762827,0.006891656,-0.053982712,-0.055877175,-0.038892219,0.00831415,0.007544556,0.011633559,-0.011287098,0.004888216,-0.00757132,0.002214274,-0.066749221,Kenya
IL3779,0.016833768,0.036787884,0.040480941,-0.018857479,0.016563892,0.01213969,-0.049718902,-0.008927229,0.002485077,-0.014808242,0.007068571,-0.016042367,0.015858886,-0.00859735,-0.031167231,Kenya
IL3949,-0.02155984,-0.031224451,-0.024629796,-0.001651143,0.028653884,0.027061193,0.006364642,-0.003880972,0.005099318,-0.004134006,-0.008855174,0.011256483,-0.002139432,0.004326675,0.015412528,Kenya
IL2992,-0.006201415,0.002410149,-0.003208889,0.004457767,0.017526609,0.01289236,-0.012873111,-0.007929505,0.004095439,0.001995539,0.01261732,-0.003929642,0.006056681,-0.001735806,-0.026073585,Kenya
IL3000,0.033171632,0.059193388,0.025684854,-0.002403566,0.008191876,0.015471918,0.003091112,-0.016926235,0.004258949,-0.026628534,-0.000275593,-0.046836465,0.009733223,-0.04534304,-0.02028361,Kenya
IL3019,0.001172992,-0.000441044,0.000741032,0.004592181,0.014125543,0.014591874,-0.019051036,-0.007733994,0.003239063,0.004380358,0.003136084,-0.005251374,0.007841731,-0.001320347,-0.019923154,Kenya
IL3021,-0.00518108,-0.00476488,-0.003507125,0.004558882,0.013962074,0.014422352,-0.016262994,-0.007782429,0.005211782,0.005298606,0.014790767,-0.005426951,0.008657055,-0.00444138,-0.019434767,Kenya
IL3022,-0.010107699,-0.003033906,-0.005918653,0.005121078,0.009464501,0.00983601,-0.011099661,0.000961209,0.002622718,0.004055855,0.01760175,-0.0069508,0.00905651,-0.003982746,-0.017526257,Kenya
IL3180,-0.004140127,-0.00092623,-0.000958209,0.002610096,0.015142694,0.015445846,-0.013321265,-0.004701034,0.003262996,0.015029442,0.007061091,-0.00564518,0.010293773,-0.003009797,-0.036044185,Kenya
IL3349,0.004626947,-0.001909853,0.004865124,0.007958248,0.009142356,0.009424126,-0.016206797,-0.000448172,0.006420568,-0.002676958,0.007925919,-0.000746072,0.002028014,-0.005553199,-0.024750341,Kenya
IL3775,0.03042909,0.024043882,0.005138264,0.003156452,0.009684539,0.007169358,-0.032597911,0.003326619,6.87037E-05,-0.002691981,0.004394223,-0.014408521,0.006193395,-0.005871407,-0.037934795,Kenya
IL3978,0.038433384,0.04885685,0.036074811,0.00312528,0.003010252,-0.001461842,-0.031711239,0.002758594,-0.003166264,-0.001254602,-0.019559781,-0.02207685,-0.009524256,-0.015829151,-0.027575277,Kenya
IL2281,-0.04194856,-0.051533775,-0.032458175,-0.000976283,0.002858343,0.003377568,0.044482338,-0.000474913,-0.001299945,0.001241058,-0.011768983,0.020696588,-0.000257762,0.004461648,0.063700765,Nigeria
IL3304,-0.011844393,-0.00614315,-0.013369633,-0.001041387,0.00328803,-0.002572953,0.043844317,0.001647483,-0.005388487,-0.023199047,-0.065115337,0.011256483,0.012697967,-0.00221804,0.058258057,Nigeria
IL3954,-0.032098017,-0.017990976,-0.00927543,-0.008831242,-0.007798927,-0.01347875,0.036797215,-0.00119672,-0.001384863,-0.003217163,0.000246982,0.009444889,-0.009131743,0.004249351,0.053765303,Nigeria
IL1180,-0.027817629,-0.020851179,-0.025766227,-0.010652092,-0.004704671,-0.006611883,0.036739694,-0.00628439,-0.00561963,-0.001568876,0.023303155,0.001828259,-0.010720525,0.007964442,0.050861463,Tanzania
IL1769,0.013568586,0.001511717,-0.006894707,-0.006498614,0.017403074,0.033149761,-0.020255978,-0.004960186,-0.003633324,0.006918947,0.013232746,-0.002386585,-0.013039496,0.001808509,-0.029824539,Tanzania
IL2068,0.040028353,0.047852213,0.040960609,-0.012195431,0.018828988,0.008936578,-0.029375673,0.00522296,-0.002268961,-0.006717851,-0.045465672,-0.013537437,-0.012430833,-0.008949106,-0.030788826,Tanzania
IL3296,0.031079104,0.030004391,0.019225995,0.009067903,0.00271426,-0.007928145,0.024390765,0.00831415,-0.013230017,0.0105168,-0.084678178,-0.009371932,-0.030608044,0.00983114,0.000771718,Tanzania
IL3686,-0.015873929,0.010249255,0.007453151,0.002967052,0.021874528,-0.017847215,-0.022991126,-0.004344078,-0.000599457,0.003931755,0.036066098,-0.010367989,-0.009137476,0.003246095,-0.004526753,Tanzania
IL3688,-0.011060729,0.000346916,0.003771647,-0.001758826,0.015307898,0.017780248,-0.015670032,0.000863819,0.003033147,-0.005439665,0.002478482,-0.000884797,0.003150505,0.00380845,-0.015627153,Tanzania
ILC22,-0.022971641,-0.022304976,-0.022131736,0.003177147,-0.007230642,-0.00143879,0.010704621,1.53948E-05,0.004659923,0.00940123,0.019559629,0.015578752,0.005471134,0.012864948,-0.005255083,Tanzania
IL311,0.033162691,0.020217105,0.014389842,-0.002440607,-0.043295392,-0.035509546,0.021045875,0.004063353,0.000337691,-0.018604644,-0.010414664,0.008289781,-0.007608445,-0.011851409,0.028318276,The Gambia
IL3674,0.006378929,-0.000153051,0.000156219,-0.00087637,-0.028521651,-0.028249521,0.02747468,0.00061338,-0.00022347,-0.01603733,0.008438019,0.00671853,0.001724369,-0.006822,0.029479179,The Gambia
IL3675,-0.011312107,-0.008472993,-0.023203839,0.001227374,-0.028570609,-0.014318154,0.027072938,0.000460747,-0.002046427,-0.000563794,0.027676984,0.011038333,-0.006193831,0.00791285,0.019392437,The Gambia
IL2326,0.04325709,0.052018443,0.056228337,-0.014819685,0.033159224,0.012212371,-0.041183006,0.001288389,0.006910499,-0.004003106,-0.04814422,-0.022018302,-0.029671276,-0.011714527,-0.03342032,Uganda
IL588,0.008761667,0.019311395,0.045418245,0.008807098,-0.013530152,-0.026966893,0.011723105,0.00831415,0.007187271,-0.011986925,-0.015266852,0.009741332,0.018758573,-0.012672585,-0.057499519,Uganda
\ No newline at end of file
+Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour
IL3578,-0.052542546,-0.066570861,-0.048511667,-0.002799176,0.004450521,0.074673646,0.057727776,-0.003783614,0.004340396,0.003467088,-0.037526564,0.027032174,0.008828943,0.020084342,0.011129542,Burkina Faso
IL2995,0.00437454,0.089788888,0.0020304,0.002506978,-0.034906633,-0.044313986,-0.018352542,-0.009433332,0.020602421,-0.004816619,0.017290965,0.013824051,0.045437585,-0.011332668,-0.07270005,Burkina Faso
IL3897,-0.000953267,-0.009225042,-0.002975656,-0.003956418,-0.011513492,-0.008760575,0.019746481,0.006322971,-0.001778153,-0.003482301,-0.019871197,0.010634938,-0.005503061,0.00846444,0.022850332,Burkina Faso
BANAN CL2,0.032187808,0.047430166,0.040425158,0.003882899,-0.032842751,-0.019907762,-0.029621993,0.00268788,0.005172446,-0.001540616,0.010280318,-0.005602648,0.002259862,0.003376587,-0.058187355,Burkina Faso
KARAN,0.022925393,0.030898333,0.015670974,-0.002772186,0.021778806,0.019560626,-0.011712599,0.000575767,-0.001784843,0.002733242,-0.040230615,-0.006472861,-0.016174527,-0.009332488,-0.025663022,Burkina Faso
SA267,0.017189813,0.038536312,0.031032938,0.00622809,-0.009003603,0.004775746,-0.026475977,-0.000926716,-0.002201101,0.018250872,-0.004039439,-0.019938445,-0.015913937,0.00278542,-0.040299975,Burkina Faso
SA268,0.023213692,0.026678903,0.025655588,0.009662571,-0.003773938,0.008848552,-0.026282347,0.000983335,-0.005016948,0.016767465,-0.005114253,-0.021461234,-0.009179532,0.001031258,-0.042013113,Burkina Faso
SA95-3308,0.049965586,0.044197843,0.035677684,0.000903101,-0.026580125,-0.02319059,-0.032753306,0.000667678,0.002243153,0.006035142,0.004118702,-0.015148103,-0.000972461,-0.00788604,-0.037278265,Burkina Faso
DIND,0.036432733,0.0146312,0.016479512,0.005121697,0.019221773,-0.040323751,-0.004114094,0.001570795,-0.004429488,0.009421829,0.021566217,-0.006598022,0.001222806,0.002286178,-0.072489385,Burkina Faso - Forest sub-type
IL3900,0.026074501,0.018233855,0.028462049,0.007097656,0.014588079,-0.025810265,-0.015814352,-0.004215941,0.012392472,0.015112876,0.029041846,0.001195771,0.004842207,0.005431923,-0.116632678,Burkina Faso - Forest sub-type
IL3926,0.028483156,0.009342244,0.030876147,0.007963138,0.005358985,-0.029468154,-0.006255938,0.001521285,0.001780782,0.013539766,0.038227395,-0.00072571,0.001872894,-0.002746617,-0.099769373,Burkina Faso - Forest sub-type
ALME,-0.016716864,-0.015855819,-0.002990246,-0.005094373,0.022267729,0.03054994,0.008439875,0.006191668,-0.000676671,-0.005801979,-0.013794808,-0.004100123,-0.016123976,-0.009385408,0.023091054,Cameroon
BEKA,0.013787368,0.02452405,0.020798368,-0.001636974,-0.002168452,0.007038327,-0.022967616,0.006575206,0.002709395,0.005509609,-0.003996064,-0.011885757,-0.010847088,-0.005871497,-0.021568876,Cameroon
KONT1/129,0.025523819,0.034275348,0.03565165,-0.002256254,-0.010387268,-0.004894596,-0.018869996,0.011185225,-0.003651583,0.002029697,-0.022632611,-0.010947407,-0.02013314,-0.005786621,-0.009106265,Cameroon
KONT2/133,0.014854604,0.014918928,0.014394952,-0.003771446,0.003167727,0.013441742,-0.013362493,-0.004097153,-0.001559549,0.016181968,-0.010399479,-0.011885757,-0.014048796,-0.004804261,-0.013030989,Cameroon
KONT2/151,0.001777826,0.029640505,0.020175604,-0.004922805,-0.008992484,0.015315055,-0.012438393,-0.003550979,-0.000139497,0.008156354,-0.011930021,-0.011591953,-0.017561885,-0.005821274,0.001883946,Cameroon
POUSS,-0.013022643,-0.004095195,0.017606466,0.002865683,-0.000677917,0.017300462,0.000562238,-0.000244971,-0.007776647,-0.005809955,-0.017765531,0.013548124,-0.016549364,-0.010973963,0.025033212,Cameroon
DJUMA,-0.019884014,0.001427182,-0.016752389,-0.005324283,-0.029675595,-0.026678354,0.05479021,-0.000944368,-0.003549065,-0.008074546,-0.014141146,0.022068289,-0.022443539,0.001209586,0.067972031,Congo
MATADI,0.034498414,0.033623348,0.002218088,0.001850071,0.043969118,-0.034554226,-0.028018458,-0.000752776,0.000191385,-0.005801979,0.025267692,-0.004100123,0.030751024,-0.003309019,-0.095832557,Congo - Forest sub-type
ZRE/AGRIUMBE G143 90,0.038625772,0.022204323,0.010053518,-0.00796387,0.058821057,-0.032143325,-0.037832399,0.001887423,0.009094687,-0.009202137,0.011732577,-0.013389955,0.035867638,0.000837993,-0.088593302,Congo - Forest sub-type
ZRE/NKUIYI G291 90,0.056757946,0.024696066,-0.006603884,-0.001646222,0.055917293,-0.039801675,-0.036714058,0.007897691,0.001897408,-0.009313317,0.024972824,-0.00937766,0.023641092,-0.012019663,-0.080303841,Congo - Forest sub-type
PAUWE73,-0.002546288,0.020708455,0.002763394,-0.008888523,0.001453284,0.009569604,-0.016997355,-0.000918668,-0.005026803,-0.003461432,-0.002960128,-0.007611765,0.000222076,-0.011375284,0.025069432,Ethiopia
WETEJA F015,-0.010828639,-0.005648632,-0.000845465,0.001423761,-0.003508596,0.0054072,-0.003042566,-0.003506152,-0.004425994,-0.000514264,0.002461572,-0.000974829,0.000293372,0.003672176,0.020037056,Ethiopia
YATU F187,0.02870713,0.000930305,0.005518292,0.006507309,-0.005970357,0.004640473,-0.018774064,-0.00025902,0.001997578,0.003936171,0.008339812,-0.002450021,-0.009294211,0.002759406,-0.026588801,Ethiopia
GUTR28,0.018209804,0.019647318,0.009430657,-0.007789032,0.012390664,0.008131316,-0.028970303,-0.000746073,-0.003850603,0.013523149,0.007638456,-0.021246734,0.012297302,0.003467847,-0.042133769,Gambia
GUTR37,0.00273821,0.017275559,0.008879086,-0.002245734,0.021739809,0.017259833,-0.012726508,0.002811566,-0.004209125,0.00387064,-0.024463034,-0.018626767,-0.010455042,0.001261559,-0.003110052,Gambia
IL311,-0.048425337,-0.038778574,-0.027485832,0.002554847,0.049649762,0.043937922,-0.009247794,-0.005182535,0.000506874,0.020228618,0.007094797,-0.004605643,0.006960213,0.015282683,-0.012489999,Gambia
IL3674,-0.021641575,-0.018408418,-0.013252209,0.00099061,0.034876021,0.036677897,-0.015676599,-0.001732562,0.001068035,0.017661304,-0.011757886,-0.003034392,-0.002372601,0.010253274,-0.013650902,Gambia
IL3675,-0.003950539,-0.010088476,0.010107849,-0.001113134,0.034924979,0.02274653,-0.015274857,-0.001579929,0.002890992,0.002187768,-0.030996851,-0.007354195,0.005545599,-0.004481576,-0.00356416,Gambia
IL274,-0.019080467,-0.001391608,-0.00542196,-0.001320723,0.01903462,0.019471001,0.005538628,-0.006094434,0.001260876,-0.004297736,-0.018827791,-0.008337509,-0.008240467,-0.000970052,0.028677622,Kenya
IL2992,-0.009061231,-0.020971618,-0.009887101,-0.004343527,-0.011172239,-0.004463984,0.024671192,0.006810323,-0.003250874,-0.000371565,-0.015937187,0.00761378,-0.006704913,0.00516708,0.041901862,Kenya
IL3000,-0.048434278,-0.077754857,-0.038780844,0.002517806,-0.001837506,-0.007043542,0.008706969,0.015807053,-0.003414384,0.028252508,-0.003044274,0.050520603,-0.010381455,0.048774314,0.036111887,Kenya
IL3019,-0.016435638,-0.018120425,-0.013837022,-0.004477941,-0.007771173,-0.006163498,0.030849117,0.006614812,-0.002394498,-0.002756384,-0.006455951,0.008935512,-0.008489963,0.004751621,0.035751431,Kenya
IL3021,-0.010081566,-0.013796589,-0.009588865,-0.004444642,-0.007607704,-0.005993976,0.028061075,0.006663247,-0.004367217,-0.003674632,-0.018110634,0.009111089,-0.009305287,0.007872654,0.035263044,Kenya
IL3022,-0.005154947,-0.015527563,-0.007177337,-0.005006838,-0.003110131,-0.001407634,0.022897742,-0.002080391,-0.001778153,-0.002431881,-0.020921617,0.010634938,-0.009704742,0.00741402,0.033354534,Kenya
IL3035,8.74939E-05,-0.004008357,-0.006833636,0.002879765,0.004733007,0.005100946,-0.003233975,-0.001004213,0.006022324,-0.000426021,0.007619224,-0.007093418,0.006481388,-0.007128464,-0.003196063,Kenya
IL3180,-0.011122519,-0.017635239,-0.012137781,-0.002495856,-0.008788324,-0.00701747,0.025119346,0.003581852,-0.002418431,-0.013405468,-0.010380958,0.009329318,-0.010942005,0.006441071,0.051872462,Kenya
IL3349,-0.019889593,-0.016651616,-0.017961114,-0.007844008,-0.002787986,-0.00099575,0.028004878,-0.00067101,-0.005576003,0.004300932,-0.011245786,0.00443021,-0.002676246,0.008984473,0.040578618,Kenya
IL374,0.013743011,0.002282429,-0.000777894,-0.002210957,0.012879308,0.01663724,-0.000491788,-0.00278329,0.000360234,-0.00690599,-0.016026642,-0.012663783,-0.014322924,-0.006075541,0.016356588,Kenya
IL3775,-0.045691736,-0.042605351,-0.018234254,-0.003042212,-0.003330169,0.001259018,0.044395992,-0.004445801,0.000775861,0.004315955,-0.00771409,0.018092659,-0.006841627,0.009302681,0.053763072,Kenya
IL3779,-0.032096414,-0.055349353,-0.053576931,0.018971719,-0.010209522,-0.003711314,0.061516983,0.007808047,-0.001640512,0.016432216,-0.010388438,0.019726505,-0.016507118,0.012028624,0.046995508,Kenya
IL3932,-0.057144844,-0.050002589,-0.015025982,-0.001466096,0.033571958,0.013510693,0.036081105,0.004611612,0.007038295,-0.012180725,-0.021275691,0.023794696,-0.032353689,0.004357179,0.066484078,Kenya
IL3949,0.006297194,0.012662982,0.011533806,0.001765383,-0.022299514,-0.018632817,0.005433439,0.00276179,-0.004254753,0.00575798,0.005535307,-0.007572345,0.0014912,-0.000895401,0.000415749,Kenya
IL396,0.007756611,-0.005123237,0.001284572,-0.003215958,0.019213881,0.017176193,0.002981087,-0.005334971,-0.002318861,-0.009712498,-0.025199066,-0.009075078,-0.013482811,-0.007219538,0.032269674,Kenya
IL3978,-0.05369603,-0.067418319,-0.049170801,-0.00301104,0.003344118,0.009890218,0.04350932,-0.003877776,0.004010829,0.002878576,0.016239914,0.025760988,0.008876024,0.019260425,0.043403554,Kenya
IL399,0.006563213,-0.008778456,0.006893261,-0.004390424,0.014199787,0.016367739,0.002524623,-0.003445308,-3.58385E-05,-0.005325254,-0.022544422,-0.010744572,-0.006666701,-0.008820318,0.02420267,Kenya
IL409,0.000512162,-0.002629211,0.001102083,-0.005366886,0.01174493,0.006007558,0.010146325,-0.003560401,-0.001552141,-0.004080699,-0.023675255,-0.004925077,-0.009746804,-0.004257253,0.030280667,Kenya
IL410,-0.018195101,-0.004447608,0.006082569,-0.002958739,0.012334122,0.012981804,0.006921686,-0.004203206,-0.001835289,-0.010923144,-0.02457831,-0.010536083,0.00258825,-0.010522234,0.04729128,Kenya
IL438,-0.028774336,-0.025430188,-0.037614586,-0.000674245,0.036978308,0.035590845,0.010011133,-0.009433332,-0.00059682,-0.001180936,-0.005405322,-0.005717746,-0.001452034,0.000322905,0.033376353,Kenya
IL439,-0.00367341,-0.000154475,-0.000111807,-0.002481724,0.018685233,0.017472556,0.002666034,-0.005361671,-0.000775635,-0.00415635,-0.02272136,-0.010965396,-0.01304761,-0.002477722,0.027103337,Kenya
ILC55,-0.099917525,-0.078117009,-0.061858817,-0.006777416,0.060337082,0.064305551,0.0506903,-0.009433332,-0.006699991,-0.010009585,0.007967231,-0.001204078,0.006923088,0.001217,0.082577498,Kenya
ILC66,0.007708995,0.003743507,0.009035746,-0.003062907,0.013585012,0.009867166,0.00109346,-0.001134577,-0.003815358,-0.007777256,-0.022879496,-0.011894614,-0.006119366,-0.009433674,0.02108336,Kenya
MALI/1312/95,0.010005171,0.015183032,-0.001066447,-0.00453131,0.029282556,0.03395178,-0.01244038,-0.00352117,-0.001075507,-0.000593646,-0.010580656,-0.001941715,-0.00326737,-0.007391227,-0.042013113,Mali
MALI25239 B695,-0.001388849,0.000471211,-0.001497448,-0.001496201,0.026277387,0.041542687,-0.008281465,0.000459496,-0.003891983,-0.005462772,-0.018737644,-0.011316506,-0.002429738,-0.009565031,-0.004683146,Mali
IL2281,0.026685914,0.032972306,0.019362185,0.001090523,0.003496028,0.005050809,-0.032684256,-0.000644269,0.00214451,0.000382917,0.008449116,-0.017012449,-0.000390469,-0.001030373,-0.047872488,Nigeria
IL3304,-0.003418253,-0.012418319,0.000273643,0.001155627,0.00306634,0.011001329,-0.032046236,-0.002766665,0.006233052,0.024823021,0.06179547,-0.007572345,-0.013346199,0.005649314,-0.04242978,Nigeria
IL3954,0.016835371,-0.000570493,-0.00382056,0.008945482,0.014153297,0.021907126,-0.024999134,7.75382E-05,0.002229428,0.004841137,-0.003566849,-0.005760751,0.008483511,-0.000818077,-0.037937026,Nigeria
Tc1/148,-0.000661778,-0.041737189,-0.047696421,-0.005420223,-0.045788352,-0.04820486,0.08176473,-0.004387923,-0.002315552,-0.001571194,-0.028826797,0.085977941,0.018128742,0.027157891,0.013580984,Nigeria
IL1180,0.012554983,0.00228971,0.012670237,0.010766332,0.011059041,0.015040259,-0.024941613,0.005165208,0.006464195,0.00319285,-0.026623022,0.001855879,0.010072293,-0.004533168,-0.035033186,Tanzania
IL1769,-0.028831232,-0.020073186,-0.006201283,0.006612854,-0.011048704,-0.024721385,0.032054059,0.003841004,0.004477889,-0.005294973,-0.016552613,0.006070723,0.012391264,0.001622765,0.045652816,Tanzania
IL2068,-0.055290999,-0.066413682,-0.054056599,0.012309671,-0.012474618,-0.000508202,0.041173754,-0.006342142,0.003113526,0.008341825,0.042145805,0.017221575,0.011782601,0.01238038,0.046617103,Tanzania
IL3296,-0.04634175,-0.04856586,-0.032321985,-0.008953663,0.00364011,0.016356521,-0.012592684,-0.009433332,0.014074582,-0.008892826,0.081358311,0.01305607,0.029959812,-0.006399866,0.015056559,Tanzania
IL3686,0.000611283,-0.028810724,-0.020549141,-0.002852812,-0.015520158,0.026275591,0.034789207,0.003224896,0.001444022,-0.002307781,-0.039385965,0.014052127,0.008489244,0.000185179,0.02035503,Tanzania
IL3688,-0.004201917,-0.018908385,-0.016867637,0.001873066,-0.008953528,-0.009351872,0.027468113,-0.001983001,-0.002188582,0.007063639,-0.005798349,0.004568935,-0.003798737,-0.000377176,0.03145543,Tanzania
ILC22,0.007708995,0.003743507,0.009035746,-0.003062907,0.013585012,0.009867166,0.00109346,-0.001134577,-0.003815358,-0.007777256,-0.022879496,-0.011894614,-0.006119366,-0.009433674,0.02108336,Tanzania
TOGO222,0.014843725,0.0252932,0.023051421,-0.002259256,0.000247788,0.006985019,-0.018876001,0.000760348,0.003934377,-0.006359446,-0.01133399,-0.00948366,-0.01153682,-0.016098902,0.000832198,Togo
TOGO2264,0.029171324,0.02481838,0.027032601,0.004032934,-0.001130186,0.01041501,-0.018235161,0.003595984,0.001938806,0.018102065,-0.001548721,-0.018837275,-0.007618729,-0.007635159,-0.064101875,Togo
IL2326,-0.058519736,-0.070579912,-0.069324327,0.014933925,-0.026804854,-0.003783995,0.052981087,-0.002407571,-0.006065934,0.00562708,0.044824353,0.02570244,0.029023044,0.015145801,0.049248597,Uganda
IL588,-0.024024313,-0.037872864,-0.058514235,-0.008692858,0.019884522,0.035395269,7.49764E-05,-0.009433332,-0.006342706,0.013610899,0.011946985,-0.006057194,-0.019406805,0.016103859,0.073327796,Uganda
EATRO1157C2,-0.005207169,0.00483107,-0.00411511,-0.004101097,0.022825916,0.014277613,-0.017669708,-0.002098369,-0.005653664,-0.008208764,-0.003061906,0.000475739,4.01088E-05,-0.0065308,0.014196137,Uganda
ALICK 339 C6,-0.036358328,-0.000564386,-0.004913623,-0.004275085,-0.010248267,-0.012893802,0.031024925,-0.000444568,-0.010939233,-0.009371736,0.012432174,0.015929527,-0.024488521,-0.002384394,0.057495314,Zambia
CHIPOPELA 313,-0.0098269,0.000782518,-0.000193581,-0.000866689,-0.023230731,-0.012122799,0.022612063,-0.001065131,0.002348812,-0.013015194,0.003664368,-7.58322E-05,0.003634276,0.006214168,0.021140653,Zambia
J4J4,-0.013158574,-0.019212464,-0.013461012,-0.002291021,0.00227786,0.002823803,0.012221942,-0.00376761,-0.005046457,-0.003515034,-0.000395276,0.002696776,-0.000858002,0.0008665,0.040818568,Zambia
KAPEVE 27 PC2,0.034193833,0.0385271,0.023051421,-0.003815134,-0.017099352,-0.013599061,-0.031734345,-0.001636061,-0.007636344,0.003244073,0.007175587,0.003392567,-0.005402729,0.001838398,-0.030499955,Zambia
KAPEYA 357,0.001972904,-0.00134689,0.011430106,0.006172633,-0.008362231,-0.006209555,0.006916349,0.00204626,0.003699038,-0.003782422,0.009465538,-0.004596155,-0.001526471,0.0063636,-0.022242705,Zambia
KASANDA 20 C4,0.027479183,0.021043219,0.013478772,-0.003203348,-0.037318275,-0.022332004,0.000774277,0.005951283,-0.006202846,0.003540969,-0.009486582,0.004607142,-0.003987224,0.007572391,-0.001916959,Zambia
LOMBO 3020 C1,-0.003630781,-0.003324359,0.02603427,0.004623188,-0.002873257,-0.005956165,-0.018533931,0.001304923,0.004700613,0.005740247,0.04573283,0.004452263,-0.001880874,-0.001162767,-0.0552262,Zambia
MPHITA 4028 C1,-1.24561E-05,0.013016464,0.004114223,-0.003337127,-0.02193366,-0.015375482,-0.019292612,-0.00247681,-0.003259702,-0.004017559,0.022085325,0.001195771,0.003103077,0.000214531,0.025976017,Zambia
MSORO M19 C1,0.008828771,0.028787038,0.015734953,-0.002118183,-0.020639017,-0.01992129,0.011540074,0.006191668,0.003539599,-0.013986503,-0.013174768,-0.010176512,-0.011411675,0.004131457,0.012674387,Zambia
MSOSORO M7 C1,-0.00465999,0.000617564,0.002591868,0.008096137,-0.022273603,-0.017950512,0.019776238,-0.001879035,0.002507839,0.002150688,0.009047594,-0.005801807,0.007640581,0.001810787,-0.00167435,Zambia
TRT1,0.014654811,0.010521474,0.008835889,-0.002340767,0.006739905,0.012926698,-0.023742692,-0.000966728,0.001499593,-0.001740165,-0.005642599,-0.005965258,0.000756968,-0.006773075,-0.008764054,Zambia
TRT12,0.03700011,0.042690229,0.013704218,0.003484889,-0.045651435,-0.04062237,-0.020956231,-0.001292219,0.004919167,-0.00877716,0.017951055,-0.012604005,0.019229559,0.003213764,-0.012289572,Zambia
TRT15,0.02424078,0.01426107,0.01213115,-0.002152261,0.001997638,0.006370286,-0.025341401,-0.000845546,0.001741958,0.001553301,-0.004604021,-0.007254279,0.006564743,-0.006449923,-0.022213495,Zambia
TRT17C1,-0.003569768,-0.016509228,-0.008968781,0.00448896,0.010793613,0.020395269,-0.010834114,0.000566668,0.002748203,-0.007298191,0.036946985,0.000760988,0.006502286,-0.003896141,-0.032126749,Zambia
TRT21,0.055521141,0.034854408,0.021031219,0.014034415,-0.021024569,-0.014604731,7.49764E-05,0.011021213,-0.001797251,-0.006843646,-0.019871197,-0.008329921,-0.01486135,-0.01798705,-0.031217658,Zambia
TRT25,0.032094568,0.024971206,0.005229999,0.018858845,-0.027563775,-0.031235441,-0.009373022,0.015116586,0.000932997,0.005799562,0.022068247,-0.000139176,-0.006213084,-0.003164107,-0.047383408,Zambia
TRT37,0.014949751,0.020768902,0.023381618,-0.002138083,-0.002498296,-0.00289664,-0.029034844,0.000967857,0.005368762,-0.012527153,0.006688981,-0.006148373,0.011529978,-0.011520077,-0.016892385,Zambia
TRT38,0.006831543,-0.00849121,0.0020304,-0.003226028,-0.002965601,0.00155006,0.012769489,-0.002881325,0.000946401,-0.00563562,0.017290965,0.003996041,0.002849543,-0.006418663,-0.018645996,Zambia
TRT42,-0.03271049,-0.021527908,0.000981406,0.006749234,0.006559491,-0.000688168,0.012839609,-0.000871688,-0.006871971,-0.004446386,-0.013021882,0.01754181,-0.001474053,-0.013939727,0.050880723,Zambia
TRT44,0.035930355,0.026786533,0.018409313,-0.004729369,-0.029588647,-0.027291573,-0.022468518,-0.001347079,0.000738892,-0.000846341,0.003376781,-0.000721492,0.010530711,-0.014525888,0.005746321,Zambia
TRT46,0.012027678,0.015246118,0.017848894,-0.002133114,-0.015110918,-0.008820298,0.000328346,-0.001629542,0.000173966,-0.009547102,0.006745302,-0.001301442,0.01527699,-0.000365179,-0.028739702,Zambia
TRT54,0.019255608,0.025027724,0.022731677,0.003193996,-0.037473228,-0.030677328,-0.028113382,-0.000800238,0.00471027,-0.008822063,0.023474127,-0.007512393,0.017529101,0.012375933,-0.014899804,Zambia
TRT573R,0.013433599,0.038137237,0.023051421,-0.004399929,-0.039711438,-0.041961634,-0.032416606,0.001677779,0.001233052,-0.009621424,0.016239914,-0.006646419,0.024616764,0.003982647,0.012385035,Zambia
TRT59,-0.004360282,0.03910342,0.016288136,-0.002467562,-0.057585834,-0.049288526,-0.023640439,0.003610146,-0.011085789,-0.023147994,0.00295489,-0.001412925,0.045711772,-0.016307208,0.081628191,Zambia
TRT61,0.030103461,0.017180473,0.016340655,-0.002568848,-0.002399579,-0.007111987,-0.015181122,0.001783234,0.00182264,-0.003370825,0.001806974,-0.010412437,-0.009557013,-0.000877865,-0.017557764,Zambia
YOBO 2007 C2,-0.011810066,0.006558289,0.004337971,0.00320241,-0.016319625,-0.016717969,0.000234466,-0.002415788,0.002110245,-0.000264699,0.037584943,0.00807093,0.013700585,0.002228261,-0.030499955,Zambia
YOBO 2038 C2,0.011013335,0.00073028,0.0069464,-0.002112745,0.001403733,-0.007520798,-0.016146926,0.000310882,0.002836787,0.005915185,0.035396769,-0.009044128,0.000184049,-0.00864423,-0.021268594,Zambia
\ No newline at end of file
--- a/data/ogeoTv.csv	Tue Jul 10 09:22:53 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-Strain,Location,colour
-TvY486,Nigeria,b
-Tv11,Nigeria,b
-Tv306,Nigeria,b
-Tv319,Nigeria,b
-Tv338,Nigeria,b
-Tv340,Nigeria,b
-Tv462,Nigeria,b
-Tv465,Nigeria,b
-Tv493,Nigeria,b
-Tv596,Nigeria,b
-Tv684,Nigeria,b
-Tv1392,Nigeria,b
-Tv2005,Uganda,g
-Tv2323,Uganda,g
-Tv2714,Uganda,g
-TvILV-21,Uganda,g
-Tv3171,Gambia,c
-Tv3638,Ivory Coast,r
-Tv3651,Ivory Coast,r
-Tv3658,Ivory Coast,r
-TvLins,Brazil,m