Mercurial > repos > johnheap > vapper
changeset 2:82770f07a036 draft
planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy
| author | johnheap |
|---|---|
| date | Tue, 10 Jul 2018 09:22:53 -0400 |
| parents | 199e5afe498d |
| children | 4432e4183ebd |
| files | data/congodata.csv data/geoTv.csv data/ogeoTv.csv data/vivax/TvDatabase.csv data/vivax/geoTv.csv |
| diffstat | 5 files changed, 1115 insertions(+), 1150 deletions(-) [+] |
line wrap: on
line diff
--- a/data/congodata.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/congodata.csv Tue Jul 10 09:22:53 2018 -0400 @@ -1,44 +1,1 @@ -Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour -IL3578,0.06920904,0.050847458,0.039548023,0.012711864,0.066384181,0.13700565,0.103107345,0.005649718,0.019774011,0.035310734,0.107344633,0.076271186,0.080508475,0.049435028,0.146892655,Burkina Faso -IL2995,0.126126126,0.207207207,0.09009009,0.018018018,0.027027027,0.018018018,0.027027027,0,0.036036036,0.027027027,0.162162162,0.063063063,0.117117117,0.018018018,0.063063063,Burkina Faso -IL3897,0.120798319,0.108193277,0.085084034,0.011554622,0.050420168,0.053571429,0.06512605,0.015756303,0.013655462,0.028361345,0.125,0.05987395,0.066176471,0.037815126,0.158613445,Burkina Faso -IL3900,0.147826087,0.135652174,0.116521739,0.022608696,0.076521739,0.036521739,0.029565217,0.005217391,0.027826087,0.046956522,0.173913043,0.050434783,0.076521739,0.034782609,0.019130435,Forest sub-type -IL3926,0.150234742,0.126760563,0.118935837,0.023474178,0.067292645,0.03286385,0.039123631,0.010954617,0.017214397,0.045383412,0.183098592,0.048513302,0.073552426,0.026604069,0.03599374,Forest sub-type -IL274,0.102671119,0.116026711,0.08263773,0.014190317,0.08096828,0.081803005,0.050918197,0.003338898,0.016694491,0.02754591,0.126043406,0.040901503,0.063439065,0.028380634,0.164440735,Kenya -IL2992,0.112690355,0.096446701,0.078172589,0.011167513,0.050761421,0.05786802,0.070050761,0.016243655,0.012182741,0.031472081,0.12893401,0.056852792,0.064974619,0.034517766,0.177664975,Kenya -IL3000,0.073317308,0.039663462,0.049278846,0.018028846,0.060096154,0.055288462,0.054086538,0.025240385,0.012019231,0.060096154,0.141826923,0.099759615,0.061298077,0.078125,0.171875,Kenya -IL3019,0.105315948,0.099297894,0.074222668,0.011033099,0.054162487,0.056168506,0.076228686,0.016048144,0.013039117,0.029087262,0.138415246,0.058174524,0.063189569,0.034102307,0.171514544,Kenya -IL3021,0.11167002,0.10362173,0.078470825,0.011066398,0.054325956,0.056338028,0.073440644,0.016096579,0.011066398,0.028169014,0.126760563,0.058350101,0.062374245,0.03722334,0.171026157,Kenya -IL3022,0.116596639,0.101890756,0.080882353,0.010504202,0.058823529,0.06092437,0.068277311,0.007352941,0.013655462,0.029411765,0.12394958,0.05987395,0.06197479,0.036764706,0.169117647,Kenya -IL3035,0.12183908,0.113409962,0.081226054,0.018390805,0.066666667,0.06743295,0.042145594,0.008429119,0.021455939,0.031417625,0.152490421,0.042145594,0.07816092,0.022222222,0.13256705,Kenya -IL3180,0.110629067,0.09978308,0.075921909,0.013015184,0.053145336,0.055314534,0.070498915,0.013015184,0.013015184,0.018438178,0.134490239,0.05856833,0.060737527,0.035791757,0.187635575,Kenya -IL3349,0.101861993,0.100766703,0.070098576,0.007667032,0.059145674,0.061336254,0.073384447,0.008762322,0.009857612,0.036144578,0.133625411,0.053669222,0.069003286,0.038335159,0.176341731,Kenya -IL374,0.135494597,0.119700748,0.087281796,0.013300083,0.074812968,0.078969244,0.044887781,0.006650042,0.015793849,0.024937656,0.128844555,0.036575229,0.057356608,0.023275145,0.152119701,Kenya -IL3775,0.07605985,0.074812968,0.069825436,0.012468828,0.058603491,0.063591022,0.089775561,0.004987531,0.016209476,0.036159601,0.137157107,0.067331671,0.064837905,0.038653367,0.189526185,Kenya -IL3779,0.089655172,0.062068966,0.034482759,0.034482759,0.051724138,0.05862069,0.106896552,0.017241379,0.013793103,0.048275862,0.134482759,0.068965517,0.055172414,0.04137931,0.182758621,Kenya -IL3932,0.064606742,0.06741573,0.073033708,0.014044944,0.095505618,0.075842697,0.081460674,0.014044944,0.02247191,0.019662921,0.123595506,0.073033708,0.039325843,0.033707865,0.202247191,Kenya -IL3949,0.12804878,0.130081301,0.099593496,0.017276423,0.039634146,0.043699187,0.050813008,0.012195122,0.011178862,0.037601626,0.150406504,0.041666667,0.073170732,0.028455285,0.136178862,Kenya -IL396,0.129508197,0.112295082,0.089344262,0.012295082,0.081147541,0.079508197,0.048360656,0.004098361,0.013114754,0.022131148,0.119672131,0.040163934,0.058196721,0.022131148,0.168032787,Kenya -IL3978,0.068055556,0.05,0.038888889,0.0125,0.065277778,0.072222222,0.088888889,0.005555556,0.019444444,0.034722222,0.161111111,0.075,0.080555556,0.048611111,0.179166667,Kenya -IL399,0.128314799,0.108639863,0.094952951,0.011120616,0.076133447,0.078699743,0.047904192,0.005988024,0.015397776,0.026518392,0.122326775,0.03849444,0.065012831,0.020530368,0.159965783,Kenya -IL409,0.122263748,0.114789108,0.089161773,0.010144154,0.07367859,0.068339562,0.055525894,0.005872931,0.013881474,0.027762947,0.121195942,0.044313935,0.061932728,0.025093433,0.16604378,Kenya -IL410,0.103556485,0.112970711,0.094142259,0.012552301,0.074267782,0.075313808,0.052301255,0.005230126,0.013598326,0.020920502,0.120292887,0.038702929,0.074267782,0.018828452,0.183054393,Kenya -IL438,0.09297725,0.091988131,0.050445104,0.014836795,0.098911968,0.097922849,0.055390702,0,0.014836795,0.03066271,0.139465875,0.043521266,0.070227498,0.029673591,0.169139466,Kenya -IL439,0.118078176,0.117263844,0.087947883,0.013029316,0.080618893,0.07980456,0.048045603,0.004071661,0.01465798,0.027687296,0.122149837,0.038273616,0.058631922,0.026872964,0.16286645,Kenya -ILC55,0.021834061,0.03930131,0.026200873,0.008733624,0.122270742,0.126637555,0.096069869,0,0.008733624,0.021834061,0.152838428,0.048034934,0.07860262,0.030567686,0.218340611,Kenya -ILC66,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Kenya -IL2281,0.1484375,0.150390625,0.107421875,0.016601563,0.065429688,0.067382813,0.012695313,0.008789063,0.017578125,0.032226563,0.153320313,0.032226563,0.071289063,0.028320313,0.087890625,Nigeria -IL3304,0.118333333,0.105,0.088333333,0.016666667,0.065,0.073333333,0.013333333,0.006666667,0.021666667,0.056666667,0.206666667,0.041666667,0.058333333,0.035,0.093333333,Nigeria -IL3954,0.138586957,0.116847826,0.08423913,0.024456522,0.076086957,0.08423913,0.020380435,0.00951087,0.017663043,0.036684783,0.141304348,0.043478261,0.080163043,0.028532609,0.097826087,Nigeria -IL1180,0.134306569,0.119708029,0.100729927,0.026277372,0.072992701,0.077372263,0.020437956,0.01459854,0.02189781,0.035036496,0.118248175,0.051094891,0.081751825,0.024817518,0.100729927,Tanzania -IL1769,0.092920354,0.097345133,0.081858407,0.022123894,0.050884956,0.037610619,0.077433628,0.013274336,0.019911504,0.026548673,0.128318584,0.055309735,0.084070796,0.030973451,0.181415929,Tanzania -IL2068,0.066460587,0.051004637,0.034003091,0.027820711,0.049459042,0.061823802,0.086553323,0.00309119,0.018547141,0.040185471,0.187017002,0.066460587,0.083462133,0.041731066,0.182380216,Tanzania -IL3296,0.075409836,0.068852459,0.055737705,0.006557377,0.06557377,0.078688525,0.032786885,0,0.029508197,0.02295082,0.226229508,0.062295082,0.101639344,0.02295082,0.150819672,Tanzania -IL3686,0.122362869,0.088607595,0.067510549,0.012658228,0.046413502,0.088607595,0.080168776,0.012658228,0.016877637,0.029535865,0.105485232,0.063291139,0.080168776,0.029535865,0.156118143,Tanzania -IL3688,0.117549669,0.098509934,0.071192053,0.017384106,0.052980132,0.052980132,0.072847682,0.007450331,0.013245033,0.038907285,0.139072848,0.053807947,0.067880795,0.02897351,0.167218543,Tanzania -ILC22,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Tanzania -IL311,0.073326249,0.078639745,0.060573858,0.018065887,0.111583422,0.106269926,0.036131775,0.004250797,0.015940489,0.052072264,0.151965994,0.044633369,0.078639745,0.044633369,0.123273114,The Gambia -IL3674,0.100110011,0.099009901,0.074807481,0.01650165,0.096809681,0.099009901,0.02970297,0.00770077,0.01650165,0.04950495,0.133113311,0.04620462,0.069306931,0.03960396,0.122112211,The Gambia -IL3675,0.117801047,0.107329843,0.098167539,0.014397906,0.096858639,0.085078534,0.030104712,0.007853403,0.018324607,0.034031414,0.113874346,0.041884817,0.077225131,0.02486911,0.132198953,The Gambia -IL2326,0.06323185,0.046838407,0.018735363,0.030444965,0.035128806,0.058548009,0.098360656,0.007025761,0.009367681,0.037470726,0.18969555,0.074941452,0.100702576,0.044496487,0.18501171,Uganda -IL588,0.097727273,0.079545455,0.029545455,0.006818182,0.081818182,0.097727273,0.045454545,0,0.009090909,0.045454545,0.156818182,0.043181818,0.052272727,0.045454545,0.209090909,Uganda +Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour IL3578,0.06920904,0.050847458,0.039548023,0.012711864,0.066384181,0.13700565,0.103107345,0.005649718,0.019774011,0.035310734,0.107344633,0.076271186,0.080508475,0.049435028,0.146892655,Burkina Faso IL2995,0.126126126,0.207207207,0.09009009,0.018018018,0.027027027,0.018018018,0.027027027,0,0.036036036,0.027027027,0.162162162,0.063063063,0.117117117,0.018018018,0.063063063,Burkina Faso IL3897,0.120798319,0.108193277,0.085084034,0.011554622,0.050420168,0.053571429,0.06512605,0.015756303,0.013655462,0.028361345,0.125,0.05987395,0.066176471,0.037815126,0.158613445,Burkina Faso BANAN CL2,0.153939394,0.164848485,0.128484848,0.019393939,0.029090909,0.042424242,0.015757576,0.012121212,0.020606061,0.03030303,0.155151515,0.043636364,0.073939394,0.032727273,0.077575758,Burkina Faso DIND,0.158184319,0.132049519,0.104539202,0.020632737,0.081155433,0.022008253,0.041265475,0.011004127,0.011004127,0.041265475,0.166437414,0.04264099,0.072902338,0.031636864,0.063273728,Burkina Faso KARAN,0.144676979,0.148316652,0.103730664,0.012738854,0.083712466,0.08189263,0.03366697,0.010009099,0.013648772,0.034576888,0.104640582,0.042766151,0.055505005,0.020018198,0.110100091,Burkina Faso SA267,0.138941399,0.155954631,0.119092628,0.02173913,0.052930057,0.06710775,0.018903592,0.008506616,0.013232514,0.050094518,0.140831758,0.029300567,0.055765595,0.032136106,0.095463138,Burkina Faso SA268,0.144965278,0.144097222,0.113715278,0.025173611,0.058159722,0.071180556,0.019097222,0.010416667,0.010416667,0.048611111,0.139756944,0.027777778,0.0625,0.030381944,0.09375,Burkina Faso SA95-3308,0.171717172,0.161616162,0.123737374,0.016414141,0.035353535,0.039141414,0.012626263,0.01010101,0.017676768,0.037878788,0.148989899,0.034090909,0.070707071,0.021464646,0.098484848,Burkina Faso ALME,0.105034722,0.1015625,0.085069444,0.010416667,0.084201389,0.092881944,0.053819444,0.015625,0.014756944,0.026041667,0.131076389,0.045138889,0.055555556,0.019965278,0.158854167,Cameroon BEKA,0.135538954,0.141942369,0.108858058,0.013874066,0.059765208,0.069370331,0.022411953,0.016008538,0.01814301,0.037353255,0.140875133,0.037353255,0.060832444,0.023479189,0.114194237,Cameroon KONT1/129,0.147275405,0.151693667,0.12371134,0.013254786,0.051546392,0.057437408,0.026509573,0.020618557,0.011782032,0.033873343,0.122238586,0.038291605,0.051546392,0.023564065,0.126656848,Cameroon KONT2/133,0.13660619,0.132337247,0.102454642,0.011739594,0.065101387,0.075773746,0.032017076,0.005336179,0.013874066,0.048025614,0.134471718,0.037353255,0.057630736,0.024546425,0.122732124,Cameroon KONT2/151,0.123529412,0.147058824,0.108235294,0.010588235,0.052941176,0.077647059,0.032941176,0.005882353,0.015294118,0.04,0.132941176,0.037647059,0.054117647,0.023529412,0.137647059,Cameroon POUSS,0.108728943,0.113323124,0.105666156,0.018376723,0.061255743,0.079632466,0.045941807,0.009188361,0.007656968,0.026033691,0.127105666,0.062787136,0.055130168,0.018376723,0.160796325,Cameroon DJUMA,0.101867572,0.118845501,0.071307301,0.010186757,0.032258065,0.03565365,0.100169779,0.008488964,0.01188455,0.0237691,0.130730051,0.071307301,0.049235993,0.030560272,0.203735144,Congo MATADI,0.15625,0.151041667,0.090277778,0.017361111,0.105902778,0.027777778,0.017361111,0.008680556,0.015625,0.026041667,0.170138889,0.045138889,0.102430556,0.026041667,0.039930556,Congo ZRE/AGRIUMBE G143 90,0.160377358,0.139622642,0.098113208,0.00754717,0.120754717,0.030188679,0.00754717,0.011320755,0.024528302,0.022641509,0.156603774,0.035849057,0.10754717,0.030188679,0.047169811,Congo ZRE/NKUIYI G291 90,0.178509532,0.142114385,0.081455806,0.013864818,0.117850953,0.022530329,0.008665511,0.017331023,0.017331023,0.022530329,0.169844021,0.039861352,0.095320624,0.017331023,0.055459272,Congo PAUWE73,0.119205298,0.138126774,0.090823084,0.006622517,0.063386944,0.071901608,0.028382214,0.008514664,0.010406812,0.028382214,0.141911069,0.041627247,0.071901608,0.017975402,0.160832545,Ethiopia WETEJA F015,0.110922947,0.111769687,0.087214225,0.016934801,0.058425064,0.067739204,0.042337003,0.00592718,0.011007621,0.031329382,0.147332769,0.048264183,0.071972904,0.033022862,0.155800169,Ethiopia YATU F187,0.150458716,0.118348624,0.093577982,0.022018349,0.055963303,0.066972477,0.026605505,0.009174312,0.017431193,0.035779817,0.153211009,0.046788991,0.062385321,0.032110092,0.109174312,Ethiopia IL3900,0.147826087,0.135652174,0.116521739,0.022608696,0.076521739,0.036521739,0.029565217,0.005217391,0.027826087,0.046956522,0.173913043,0.050434783,0.076521739,0.034782609,0.019130435,Forest sub-type IL3926,0.150234742,0.126760563,0.118935837,0.023474178,0.067292645,0.03286385,0.039123631,0.010954617,0.017214397,0.045383412,0.183098592,0.048513302,0.073552426,0.026604069,0.03599374,Forest sub-type GUTR28,0.13996139,0.137065637,0.097490347,0.007722008,0.074324324,0.07046332,0.016409266,0.008687259,0.011583012,0.045366795,0.152509653,0.027992278,0.083976834,0.032818533,0.093629344,Gambia GUTR37,0.124489796,0.134693878,0.096938776,0.013265306,0.083673469,0.079591837,0.032653061,0.012244898,0.01122449,0.035714286,0.120408163,0.030612245,0.06122449,0.030612245,0.132653061,Gambia IL274,0.102671119,0.116026711,0.08263773,0.014190317,0.08096828,0.081803005,0.050918197,0.003338898,0.016694491,0.02754591,0.126043406,0.040901503,0.063439065,0.028380634,0.164440735,Kenya IL2992,0.112690355,0.096446701,0.078172589,0.011167513,0.050761421,0.05786802,0.070050761,0.016243655,0.012182741,0.031472081,0.12893401,0.056852792,0.064974619,0.034517766,0.177664975,Kenya IL3000,0.073317308,0.039663462,0.049278846,0.018028846,0.060096154,0.055288462,0.054086538,0.025240385,0.012019231,0.060096154,0.141826923,0.099759615,0.061298077,0.078125,0.171875,Kenya IL3019,0.105315948,0.099297894,0.074222668,0.011033099,0.054162487,0.056168506,0.076228686,0.016048144,0.013039117,0.029087262,0.138415246,0.058174524,0.063189569,0.034102307,0.171514544,Kenya IL3021,0.11167002,0.10362173,0.078470825,0.011066398,0.054325956,0.056338028,0.073440644,0.016096579,0.011066398,0.028169014,0.126760563,0.058350101,0.062374245,0.03722334,0.171026157,Kenya IL3022,0.116596639,0.101890756,0.080882353,0.010504202,0.058823529,0.06092437,0.068277311,0.007352941,0.013655462,0.029411765,0.12394958,0.05987395,0.06197479,0.036764706,0.169117647,Kenya IL3035,0.12183908,0.113409962,0.081226054,0.018390805,0.066666667,0.06743295,0.042145594,0.008429119,0.021455939,0.031417625,0.152490421,0.042145594,0.07816092,0.022222222,0.13256705,Kenya IL3180,0.110629067,0.09978308,0.075921909,0.013015184,0.053145336,0.055314534,0.070498915,0.013015184,0.013015184,0.018438178,0.134490239,0.05856833,0.060737527,0.035791757,0.187635575,Kenya IL3349,0.101861993,0.100766703,0.070098576,0.007667032,0.059145674,0.061336254,0.073384447,0.008762322,0.009857612,0.036144578,0.133625411,0.053669222,0.069003286,0.038335159,0.176341731,Kenya IL374,0.135494597,0.119700748,0.087281796,0.013300083,0.074812968,0.078969244,0.044887781,0.006650042,0.015793849,0.024937656,0.128844555,0.036575229,0.057356608,0.023275145,0.152119701,Kenya IL3775,0.07605985,0.074812968,0.069825436,0.012468828,0.058603491,0.063591022,0.089775561,0.004987531,0.016209476,0.036159601,0.137157107,0.067331671,0.064837905,0.038653367,0.189526185,Kenya IL3779,0.089655172,0.062068966,0.034482759,0.034482759,0.051724138,0.05862069,0.106896552,0.017241379,0.013793103,0.048275862,0.134482759,0.068965517,0.055172414,0.04137931,0.182758621,Kenya IL3932,0.064606742,0.06741573,0.073033708,0.014044944,0.095505618,0.075842697,0.081460674,0.014044944,0.02247191,0.019662921,0.123595506,0.073033708,0.039325843,0.033707865,0.202247191,Kenya IL3949,0.12804878,0.130081301,0.099593496,0.017276423,0.039634146,0.043699187,0.050813008,0.012195122,0.011178862,0.037601626,0.150406504,0.041666667,0.073170732,0.028455285,0.136178862,Kenya IL396,0.129508197,0.112295082,0.089344262,0.012295082,0.081147541,0.079508197,0.048360656,0.004098361,0.013114754,0.022131148,0.119672131,0.040163934,0.058196721,0.022131148,0.168032787,Kenya IL3978,0.068055556,0.05,0.038888889,0.0125,0.065277778,0.072222222,0.088888889,0.005555556,0.019444444,0.034722222,0.161111111,0.075,0.080555556,0.048611111,0.179166667,Kenya IL399,0.128314799,0.108639863,0.094952951,0.011120616,0.076133447,0.078699743,0.047904192,0.005988024,0.015397776,0.026518392,0.122326775,0.03849444,0.065012831,0.020530368,0.159965783,Kenya IL409,0.122263748,0.114789108,0.089161773,0.010144154,0.07367859,0.068339562,0.055525894,0.005872931,0.013881474,0.027762947,0.121195942,0.044313935,0.061932728,0.025093433,0.16604378,Kenya IL410,0.103556485,0.112970711,0.094142259,0.012552301,0.074267782,0.075313808,0.052301255,0.005230126,0.013598326,0.020920502,0.120292887,0.038702929,0.074267782,0.018828452,0.183054393,Kenya IL438,0.09297725,0.091988131,0.050445104,0.014836795,0.098911968,0.097922849,0.055390702,0,0.014836795,0.03066271,0.139465875,0.043521266,0.070227498,0.029673591,0.169139466,Kenya IL439,0.118078176,0.117263844,0.087947883,0.013029316,0.080618893,0.07980456,0.048045603,0.004071661,0.01465798,0.027687296,0.122149837,0.038273616,0.058631922,0.026872964,0.16286645,Kenya ILC55,0.021834061,0.03930131,0.026200873,0.008733624,0.122270742,0.126637555,0.096069869,0,0.008733624,0.021834061,0.152838428,0.048034934,0.07860262,0.030567686,0.218340611,Kenya ILC66,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Kenya MALI/1312/95,0.131756757,0.132601351,0.086993243,0.01097973,0.091216216,0.096283784,0.032939189,0.005912162,0.014358108,0.03125,0.134290541,0.047297297,0.068412162,0.021959459,0.09375,Mali MALI25239 B695,0.120362737,0.11788953,0.086562242,0.014014839,0.088211047,0.103874691,0.037098104,0.009892828,0.011541632,0.026380874,0.126133553,0.037922506,0.069249794,0.019785655,0.131079967,Mali IL2281,0.1484375,0.150390625,0.107421875,0.016601563,0.065429688,0.067382813,0.012695313,0.008789063,0.017578125,0.032226563,0.153320313,0.032226563,0.071289063,0.028320313,0.087890625,Nigeria IL3304,0.118333333,0.105,0.088333333,0.016666667,0.065,0.073333333,0.013333333,0.006666667,0.021666667,0.056666667,0.206666667,0.041666667,0.058333333,0.035,0.093333333,Nigeria IL3954,0.138586957,0.116847826,0.08423913,0.024456522,0.076086957,0.08423913,0.020380435,0.00951087,0.017663043,0.036684783,0.141304348,0.043478261,0.080163043,0.028532609,0.097826087,Nigeria IL1180,0.134306569,0.119708029,0.100729927,0.026277372,0.072992701,0.077372263,0.020437956,0.01459854,0.02189781,0.035036496,0.118248175,0.051094891,0.081751825,0.024817518,0.100729927,Tanzania IL1769,0.092920354,0.097345133,0.081858407,0.022123894,0.050884956,0.037610619,0.077433628,0.013274336,0.019911504,0.026548673,0.128318584,0.055309735,0.084070796,0.030973451,0.181415929,Tanzania IL2068,0.066460587,0.051004637,0.034003091,0.027820711,0.049459042,0.061823802,0.086553323,0.00309119,0.018547141,0.040185471,0.187017002,0.066460587,0.083462133,0.041731066,0.182380216,Tanzania IL3296,0.075409836,0.068852459,0.055737705,0.006557377,0.06557377,0.078688525,0.032786885,0,0.029508197,0.02295082,0.226229508,0.062295082,0.101639344,0.02295082,0.150819672,Tanzania IL3686,0.122362869,0.088607595,0.067510549,0.012658228,0.046413502,0.088607595,0.080168776,0.012658228,0.016877637,0.029535865,0.105485232,0.063291139,0.080168776,0.029535865,0.156118143,Tanzania IL3688,0.117549669,0.098509934,0.071192053,0.017384106,0.052980132,0.052980132,0.072847682,0.007450331,0.013245033,0.038907285,0.139072848,0.053807947,0.067880795,0.02897351,0.167218543,Tanzania ILC22,0.129460581,0.121161826,0.097095436,0.012448133,0.075518672,0.07219917,0.046473029,0.008298755,0.011618257,0.02406639,0.121991701,0.037344398,0.065560166,0.019917012,0.156846473,Tanzania IL311,0.073326249,0.078639745,0.060573858,0.018065887,0.111583422,0.106269926,0.036131775,0.004250797,0.015940489,0.052072264,0.151965994,0.044633369,0.078639745,0.044633369,0.123273114,The Gambia IL3674,0.100110011,0.099009901,0.074807481,0.01650165,0.096809681,0.099009901,0.02970297,0.00770077,0.01650165,0.04950495,0.133113311,0.04620462,0.069306931,0.03960396,0.122112211,The Gambia IL3675,0.117801047,0.107329843,0.098167539,0.014397906,0.096858639,0.085078534,0.030104712,0.007853403,0.018324607,0.034031414,0.113874346,0.041884817,0.077225131,0.02486911,0.132198953,The Gambia TOGO222,0.136595311,0.142711519,0.111111111,0.013251784,0.062181448,0.069317023,0.026503568,0.01019368,0.019367992,0.0254842,0.133537207,0.039755352,0.060142712,0.013251784,0.136595311,Togo TOGO2264,0.15092291,0.142236699,0.115092291,0.019543974,0.060803474,0.072747014,0.027144408,0.013029316,0.017372421,0.049945711,0.143322476,0.030401737,0.064060803,0.021715527,0.071661238,Togo IL2326,0.06323185,0.046838407,0.018735363,0.030444965,0.035128806,0.058548009,0.098360656,0.007025761,0.009367681,0.037470726,0.18969555,0.074941452,0.100702576,0.044496487,0.18501171,Uganda IL588,0.097727273,0.079545455,0.029545455,0.006818182,0.081818182,0.097727273,0.045454545,0,0.009090909,0.045454545,0.156818182,0.043181818,0.052272727,0.045454545,0.209090909,Uganda EATRO1157C2,0.116544417,0.122249389,0.08394458,0.011409943,0.084759576,0.076609617,0.027709861,0.007334963,0.009779951,0.023634882,0.141809291,0.049714751,0.071719641,0.022819886,0.14995925,Uganda ALICK 339 C6,0.085393258,0.116853933,0.083146067,0.011235955,0.051685393,0.049438202,0.076404494,0.008988764,0.004494382,0.02247191,0.157303371,0.065168539,0.047191011,0.026966292,0.193258427,Zambia CHIPOPELA 313,0.111924686,0.118200837,0.087866109,0.014644351,0.038702929,0.050209205,0.067991632,0.008368201,0.017782427,0.018828452,0.148535565,0.04916318,0.075313808,0.035564854,0.156903766,Zambia J4J4,0.108593012,0.098205855,0.074598678,0.013220019,0.06421152,0.065155807,0.057601511,0.005665722,0.010387158,0.028328612,0.144475921,0.051935788,0.07082153,0.030217186,0.176581681,Zambia KAPEVE 27 PC2,0.155945419,0.155945419,0.111111111,0.011695906,0.044834308,0.048732943,0.013645224,0.007797271,0.007797271,0.035087719,0.152046784,0.052631579,0.066276803,0.031189084,0.105263158,Zambia KAPEYA 357,0.12372449,0.116071429,0.099489796,0.021683673,0.053571429,0.056122449,0.052295918,0.011479592,0.019132653,0.028061224,0.154336735,0.044642857,0.070153061,0.035714286,0.113520408,Zambia KASANDA 20 C4,0.149230769,0.138461538,0.101538462,0.012307692,0.024615385,0.04,0.046153846,0.015384615,0.009230769,0.035384615,0.135384615,0.053846154,0.067692308,0.036923077,0.133846154,Zambia LOMBO 3020 C1,0.118120805,0.11409396,0.11409396,0.020134228,0.059060403,0.056375839,0.026845638,0.010738255,0.020134228,0.037583893,0.190604027,0.053691275,0.069798658,0.028187919,0.080536913,Zambia MPHITA 4028 C1,0.12173913,0.130434783,0.092173913,0.012173913,0.04,0.046956522,0.026086957,0.006956522,0.012173913,0.027826087,0.166956522,0.050434783,0.074782609,0.029565217,0.16173913,Zambia MSORO M19 C1,0.130580357,0.146205357,0.103794643,0.013392857,0.041294643,0.042410714,0.056919643,0.015625,0.018973214,0.017857143,0.131696429,0.0390625,0.060267857,0.033482143,0.1484375,Zambia MSOSORO M7 C1,0.117091596,0.118035883,0.090651558,0.023607177,0.039660057,0.044381492,0.065155807,0.007554297,0.017941454,0.033994334,0.153918791,0.043437205,0.079320113,0.031161473,0.134088763,Zambia TRT1,0.136406397,0.127939793,0.096895579,0.013170273,0.068673565,0.075258702,0.021636877,0.008466604,0.016933208,0.030103481,0.139228598,0.043273754,0.0724365,0.022577611,0.126999059,Zambia TRT12,0.158751696,0.160108548,0.101763908,0.018995929,0.016282225,0.021709634,0.024423338,0.008141113,0.020352782,0.023066486,0.162822252,0.036635007,0.090909091,0.03256445,0.123473541,Zambia TRT15,0.145992366,0.131679389,0.10019084,0.013358779,0.063931298,0.06870229,0.020038168,0.008587786,0.017175573,0.033396947,0.140267176,0.041984733,0.078244275,0.022900763,0.113549618,Zambia TRT17C1,0.118181818,0.100909091,0.079090909,0.02,0.072727273,0.082727273,0.034545455,0.01,0.018181818,0.024545455,0.181818182,0.05,0.078181818,0.025454545,0.103636364,Zambia TRT21,0.177272727,0.152272727,0.109090909,0.029545455,0.040909091,0.047727273,0.045454545,0.020454545,0.013636364,0.025,0.125,0.040909091,0.056818182,0.011363636,0.104545455,Zambia TRT25,0.153846154,0.142389525,0.093289689,0.034369885,0.034369885,0.031096563,0.036006547,0.024549918,0.016366612,0.037643208,0.166939444,0.049099836,0.065466448,0.026186579,0.088379705,Zambia TRT37,0.136701337,0.138187221,0.111441308,0.013372957,0.059435364,0.059435364,0.016344725,0.010401189,0.020802377,0.019316493,0.151560178,0.043090639,0.08320951,0.017830609,0.118870728,Zambia TRT38,0.128583129,0.108927109,0.09009009,0.012285012,0.058968059,0.063882064,0.058149058,0.006552007,0.016380016,0.026208026,0.162162162,0.053235053,0.074529075,0.022932023,0.117117117,Zambia TRT42,0.089041096,0.095890411,0.089041096,0.022260274,0.068493151,0.061643836,0.058219178,0.008561644,0.008561644,0.02739726,0.131849315,0.066780822,0.070205479,0.015410959,0.186643836,Zambia TRT44,0.157681941,0.144204852,0.106469003,0.010781671,0.032345013,0.035040431,0.022911051,0.008086253,0.016172507,0.030997305,0.148247978,0.04851752,0.082210243,0.014824798,0.141509434,Zambia TRT46,0.133779264,0.132664437,0.105908584,0.013377926,0.046822742,0.053511706,0.045707915,0.00780379,0.015607581,0.022296544,0.151616499,0.04793757,0.086956522,0.028985507,0.107023411,Zambia TRT54,0.141007194,0.142446043,0.110791367,0.018705036,0.024460432,0.031654676,0.017266187,0.008633094,0.020143885,0.023021583,0.168345324,0.041726619,0.089208633,0.041726619,0.120863309,Zambia TRT573R,0.135185185,0.155555556,0.111111111,0.011111111,0.022222222,0.02037037,0.012962963,0.011111111,0.016666667,0.022222222,0.161111111,0.042592593,0.096296296,0.033333333,0.148148148,Zambia TRT59,0.117391304,0.156521739,0.104347826,0.013043478,0.004347826,0.013043478,0.02173913,0.013043478,0.004347826,0.008695652,0.147826087,0.047826087,0.117391304,0.013043478,0.217391304,Zambia TRT61,0.151855047,0.134598792,0.104400345,0.012942192,0.059534081,0.055220017,0.030198447,0.011216566,0.017256255,0.028472821,0.146678171,0.038826575,0.062122519,0.028472821,0.118205349,Zambia YOBO 2007 C2,0.10994152,0.123976608,0.092397661,0.01871345,0.045614035,0.045614035,0.045614035,0.007017544,0.01754386,0.031578947,0.18245614,0.057309942,0.085380117,0.031578947,0.105263158,Zambia YOBO 2038 C2,0.132764921,0.118148599,0.09500609,0.013398295,0.063337393,0.054811206,0.029232643,0.009744214,0.018270402,0.037758831,0.180267966,0.040194884,0.071863581,0.020706456,0.114494519,Zambia \ No newline at end of file
--- a/data/geoTv.csv Wed Jul 04 16:56:54 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,22 +0,0 @@ -Strain,Location,colour -TvY486,Nigeria,b -Tv11,Nigeria,b -Tv306,Nigeria,b -Tv319,Nigeria,b -Tv338,Nigeria,b -Tv340,Nigeria,b -Tv462,Nigeria,b -Tv465,Nigeria,b -Tv493,Nigeria,b -Tv596,Nigeria,b -Tv684,Nigeria,b -Tv1392,Nigeria,b -Tv2005,Uganda,g -Tv2323,Uganda,g -Tv2714,Uganda,g -TvILV-21,Uganda,g -Tv3171,Gambia,c -Tv3638,Ivory Coast,r -Tv3651,Ivory Coast,r -Tv3658,Ivory Coast,r -TvLins,Brazil,m
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/ogeoTv.csv Tue Jul 10 09:22:53 2018 -0400 @@ -0,0 +1,22 @@ +Strain,Location,colour +TvY486,Nigeria,b +Tv11,Nigeria,b +Tv306,Nigeria,b +Tv319,Nigeria,b +Tv338,Nigeria,b +Tv340,Nigeria,b +Tv462,Nigeria,b +Tv465,Nigeria,b +Tv493,Nigeria,b +Tv596,Nigeria,b +Tv684,Nigeria,b +Tv1392,Nigeria,b +Tv2005,Uganda,g +Tv2323,Uganda,g +Tv2714,Uganda,g +TvILV-21,Uganda,g +Tv3171,Gambia,c +Tv3638,Ivory Coast,r +Tv3651,Ivory Coast,r +Tv3658,Ivory Coast,r +TvLins,Brazil,m
--- a/data/vivax/TvDatabase.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/vivax/TvDatabase.csv Tue Jul 10 09:22:53 2018 -0400 @@ -1,1084 +1,1084 @@ -COG,TvY486,Tv11,Tv306,Tv319,Tv338,Tv340,Tv462,Tv465,Tv493,Tv596,Tv684,Tv1392,Tv2005,Tv2323,Tv2714,TvILV-21,Tv3171,Tv3638,Tv3651,Tv3658,TvLins -COG1,1,1,0,1,1,1,0,0,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG10,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,0,1 -COG11,1,1,0,1,1,1,1,0,1,1,1,1,0,0,0,0,0,1,1,1,0 -COG12,1,1,0,1,1,1,1,0,1,1,1,1,1,1,1,1,1,1,0,1,1 -COG13,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1,0,0,0,0,0,1 -COG14,1,1,1,1,1,1,1,0,1,1,1,1,0,0,0,0,1,0,0,0,0 -COG15,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,1,1,0 -COG16,1,1,0,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG17,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,0,0,0 -COG18,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,0,1,0,0,0,0 -COG19,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -COG2,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,1,1,0 -COG20,1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,0,0,0,0,0 -COG21,1,1,0,1,0,1,0,0,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG22,0,1,1,1,1,1,0,0,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG23,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1 -COG231,1,0,0,1,1,1,0,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG24,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,0,1 -COG25,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,1,0,0 -COG26,1,1,0,0,1,1,0,1,0,1,1,1,0,0,0,0,0,0,1,0,1 -COG27,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -COG28,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -COG29,1,1,0,1,1,1,1,0,1,0,1,1,1,1,1,1,1,0,1,0,1 -COG3,1,1,0,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1 -COG30,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1 -COG31,1,1,1,1,1,1,1,0,1,1,1,1,0,1,1,0,0,1,1,1,0 -COG32,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -COG33,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,0,0,1,1 -COG34,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1 -COG35,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,0,1,1,1,1 -COG36,1,0,0,1,1,1,0,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG37,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -COG38,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,0,1,1 -COG39,0,1,1,0,1,0,0,0,1,0,0,1,1,1,1,0,1,0,1,1,1 -COG4,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,1 -COG40,1,0,0,0,1,0,1,0,1,0,1,1,0,0,0,0,0,0,0,0,0 -COG41,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -COG42,1,1,0,1,1,1,0,1,0,1,1,1,0,1,1,1,0,0,0,0,1 -COG43,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,1,0,0,0 -COG44,0,1,1,1,1,1,1,1,1,1,1,1,0,1,1,0,0,0,0,0,0 -COG45,1,1,1,1,1,1,0,0,0,1,1,1,0,0,0,0,0,0,1,0,0 -COG46,1,0,1,1,1,1,1,0,1,1,1,1,0,1,1,1,0,0,0,0,0 -COG47,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,1,0,0,0,0 -COG48,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG49,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG5,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,1,0,0 -COG50,1,1,0,1,1,1,1,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG51,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG52,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG53,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,0,0,0 -COG54,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,1,0 -COG55,1,1,0,1,1,1,0,0,1,1,1,1,0,0,0,0,1,0,0,0,0 -COG56,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,0,1,0 -COG57,0,1,1,1,1,1,0,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG58,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG59,1,1,1,0,1,1,0,0,1,1,0,1,0,0,0,0,0,0,0,0,0 -COG6,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -COG60,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -COG61,0,1,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,1,0,1,0 -COG62,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG63,1,1,1,1,1,1,1,0,1,1,1,1,0,0,0,1,0,0,0,0,0 -COG64,0,1,0,1,1,1,0,1,0,1,1,1,0,0,0,0,0,0,0,0,0 -COG65,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG66,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,0,0,0,0,0 -COG67,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG68,0,0,0,0,0,0,0,0,0,0,1,0,1,1,1,0,0,0,1,0,1 -COG69,1,1,0,1,1,1,1,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -COG7,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,0,0,0,0,0 -COG70,1,1,0,1,1,1,0,0,1,0,1,1,1,1,1,0,0,0,0,0,0 -COG71,1,1,1,1,1,1,0,0,1,1,1,1,1,1,1,1,0,0,0,0,1 -COG72,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,0,0,1,0,0,0 -COG73,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,0,0,1 -COG74,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,1 -COG75,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,0,0,1,0,0 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-COGP97,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -COGP98,1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1,1,1,1,1 -COGP99,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1 -Tv0000010,1,0,1,1,1,1,1,0,0,0,1,1,0,0,0,0,1,0,0,1,0 -Tv0000300,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0000360,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0001110 ,1,0,1,0,0,1,1,0,1,0,1,0,0,0,0,0,0,0,0,0,0 -Tv0001380,1,1,1,1,1,1,1,1,0,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0001830 ,1,1,0,1,1,1,1,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0002130,1,0,0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0002620,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0002700 ,1,0,0,0,1,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0 -Tv0002740 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,1,0,1,0 -Tv0002900,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0003020 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0003520 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0003710,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0004750 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0005010,0,1,1,1,1,1,1,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0005140,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0005680 ,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1 -Tv0005950 ,1,0,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -Tv0006120,0,1,0,1,1,0,1,1,1,1,1,1,0,0,0,0,0,1,1,0,0 -Tv0006500 ,0,1,0,1,1,1,0,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0006800 ,0,1,1,1,1,1,1,0,1,1,1,1,0,0,0,0,1,0,0,1,0 -Tv0007070 ,1,1,1,1,1,1,0,1,1,1,1,1,0,0,0,0,0,1,0,1,0 -Tv0007490 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,1,1,0 -Tv0007510 ,1,1,1,1,1,0,1,0,1,1,0,0,0,0,0,0,0,0,0,0,0 -Tv0008100 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0008150 ,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,0,1 -Tv0008160,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,1,1,0 -Tv0008840 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,0,0,0 -Tv0008950 ,1,1,0,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1 -Tv0009290 ,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1,1,0,0,0,0,1 -Tv0009650 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0009860,0,0,1,1,1,1,0,0,1,1,1,1,0,0,0,0,1,0,1,0,1 -Tv0010070 ,1,1,1,1,1,1,1,1,1,1,1,1,0,1,0,0,0,0,1,1,0 -Tv0010080 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,1,1,0 -Tv0010270,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1,1,0,0,0 -Tv0010770 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1,0,0,1,0 -Tv0011440 ,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1,0 -Tv0011860,1,1,1,0,1,1,1,1,1,1,0,1,0,0,0,0,0,0,0,1,0 -Tv0012000 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0012050 ,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv0012450 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0012660 ,1,1,1,1,1,1,1,0,1,1,1,1,0,0,0,0,0,1,0,0,0 -Tv0012860 ,1,0,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,1,0,1,0 -Tv0013450 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,0,1,0 -Tv0013480 ,0,1,1,1,1,1,1,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0013780,1,0,1,1,0,0,1,1,1,1,1,0,0,0,0,1,0,0,0,0,0 -Tv0013960 ,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,0,0,0,0,1,1 -Tv0014100,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,1,0,0 -Tv0014340 ,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1 -Tv0014600,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -Tv0014620 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,0,0,0,0,0 -Tv0014810 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0015020 ,0,1,0,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,1,0 -Tv0015120,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0015650 ,1,1,1,1,1,1,1,1,1,1,1,1,0,1,0,1,0,0,0,0,0 -Tv0015670,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,1,0,1,0 -Tv0015930 ,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,0,1,0 -Tv0016330 ,0,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,1,1,1 -Tv0016410,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,1,0,0 -Tv0016680,1,1,1,1,1,1,1,1,1,0,1,1,0,0,0,0,0,0,0,1,0 -Tv0017020 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1,0,0,0,0 -Tv0017060 ,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,1,1 -Tv0017470 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,0,0,1,0 -Tv0018540,0,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0018570,0,1,0,1,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv0018590,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv0020050 ,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1,1,1,0,0 -Tv0020100 ,0,1,1,1,1,1,1,1,0,0,1,1,0,0,0,0,0,0,0,0,0 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-Tv2005_275357,0,0,0,0,1,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0 -Tv2005_280326,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,0,0,0,1 -Tv2005_352085,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,1,0,0,0,0,0 -Tv2005_44653,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,0,0,1,0,1 -Tv2005_446669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2005_484699,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,0,0,0,0 -Tv2005_634741,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,0,0,0,0,0 -Tv2005_651219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2005_779591,0,0,0,0,0,1,0,0,0,0,0,0,1,1,1,0,0,0,0,0,0 -Tv2005_795034,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,0 -Tv2005_800813,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,0 -Tv2005_920178,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1,1,1,1,1 -Tv2005_934503,0,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,0,1,1,1,1 -Tv2005_945475,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0 -Tv2323_100305,1,1,0,1,1,1,1,0,0,1,1,1,1,1,1,0,0,0,1,1,1 -Tv2323_107266,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,1 -Tv2323_115652,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,1,1,0,0,0 -Tv2323_123747,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,1 -Tv2323_13237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_146594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1 -Tv2323_153768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_162093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_162450,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_167877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_172090,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_172317,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0 -Tv2323_174348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1 -Tv2323_184260,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_184759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_191327,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0 -Tv2323_199631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1 -Tv2323_201564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1 -Tv2323_202785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_208479,0,1,0,0,1,1,1,0,0,1,1,1,0,0,0,0,0,0,0,0,1 -Tv2323_210197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_210399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_217215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_217963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_220105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_220369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1 -Tv2323_225520,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_228516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_229174,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0 -Tv2323_233628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1 -Tv2323_235484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_239074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_245425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_246053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_247638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_251640,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_252813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_252912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_256987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_258151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_258389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1 -Tv2323_258754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_260610,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_265922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_272948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_276969,0,1,1,1,1,1,0,0,1,1,1,1,0,0,0,0,0,0,0,0,0 -Tv2323_278517,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0 -Tv2323_280033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_289039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_292067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_294272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_296102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_296131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_299907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_310356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_323234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_325256,0,0,0,0,0,1,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0 -Tv2323_327666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_336820,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_342734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_344146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_3896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_42181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_48511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_52293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_59290,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_68297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0 -Tv2323_79497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1 -Tv2323_98097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 -Tv2323_99032,0,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1 -Tv2714_104679,1,1,1,1,1,1,0,0,1,1,1,1,0,0,0,0,0,0,0,0,0 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--- a/data/vivax/geoTv.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/vivax/geoTv.csv Tue Jul 10 09:22:53 2018 -0400 @@ -20,3 +20,11 @@ Tv3651,Ivory Coast,r Tv3658,Ivory Coast,r TvLins,Brazil,m +TvBrRp,Brazil,m +TvMi,Brazil,m +TvBobo09,Burkina Faso,y +TvBobo14,Burkina Faso,y +TvD39,Burkina Faso,y +TvKad,Burkina Faso,y +TvGondo,Burkina Faso,y +TvMagna,Togo,grey