changeset 10:320bdfa4d927 draft default tip

Deleted selected files
author johnheap
date Wed, 04 Jul 2018 11:37:20 -0400
parents dce3c5509b96
children
files Phylotype1.hmm
diffstat 1 files changed, 0 insertions(+), 82 deletions(-) [+]
line wrap: on
line diff
--- a/Phylotype1.hmm	Wed Jul 04 11:37:08 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,82 +0,0 @@
-HMMER3/f [hmmer3.1-snap20121016 | October 2012]
-NAME  Phylotype1.2.2
-LENG  20
-ALPH  amino
-RF    no
-MM    no
-CONS  yes
-CS    no
-MAP   yes
-DATE  Wed Jul 22 16:28:52 2015
-NSEQ  114
-EFFN  16.452209
-CKSUM 230921126
-STATS LOCAL MSV       -5.8517  0.72046
-STATS LOCAL VITERBI   -6.4341  0.72046
-STATS LOCAL FORWARD   -4.6617  0.72046
-HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
-            m->m     m->i     m->d     i->m     i->i     d->m     d->d
-  COMPO   3.88091  6.11899  1.92851  2.01032  4.32208  4.24438  4.23469  3.00141  2.22197  1.74415  3.66285  2.79338  5.94754  4.01342  3.28923  2.90847  3.12039  4.23041  7.20112  2.74858
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.00000        *
-      1   5.93723  6.99655  7.95220  7.40640  4.86765  7.56972  7.82241  1.33088  7.34704  0.37080  4.56201  7.82516  7.22539  6.87530  7.13320  7.13995  6.11087  4.32050  7.33325  6.53626      1 L - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      2   5.20410  6.40045  7.26145  6.71767  4.95262  6.68808  3.86455  1.61092  6.59516  0.49989  4.70186  6.86812  6.76996  6.54000  6.57154  6.09561  5.42766  2.03821  7.14826  6.12827      2 L - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      3   3.94875  5.37457  5.60597  5.00051  3.70192  5.07981  2.74631  2.20975  2.54657  0.71200  4.42622  5.12903  5.43794  2.44525  4.89644  4.38022  4.17880  3.30167  5.97559  4.79527      3 l - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      4   6.01676  7.06650  8.00115  7.44444  4.83720  7.61022  7.80836  2.46472  7.37460  0.13772  4.53420  7.88217  7.23412  6.85920  7.13012  7.19336  6.17926  4.48385  7.30237  6.51492      4 L - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      5   5.67846  7.51901  6.14384  5.30024  7.31430  5.96347  5.72413  6.55895  0.11455  5.78227  6.73310  5.54785  6.31329  3.02471  3.90373  5.63503  5.73089  6.27508  7.60064  6.65052      5 K - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      6   7.25167  7.94884  7.54932  7.62724  5.13087  6.84171  6.63694  7.31549  7.63402  6.35385  7.78266  7.32174  7.37434  7.52813  7.39184  7.25451  7.55222  7.22206  6.73125  0.01946     12 Y - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      7   4.17392  3.92164  6.49393  6.40037  7.01002  2.07699  7.03629  6.53473  6.35021  6.21253  6.92808  1.37082  5.76856  6.44048  6.38587  0.78476  2.23462  5.54998  8.33365  7.32213     13 s - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      8   5.55195  7.40768  6.74065  5.24669  7.22877  5.93751  3.78766  6.32237  1.65739  5.54032  6.47768  5.42250  6.18594  2.46300  0.41401  5.50185  5.53906  6.06320  7.40319  6.45904     14 R - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-      9   7.16725  8.23578  6.34538  0.01128  8.22901  6.57609  7.82136  8.50300  7.25900  7.64585  8.91737  6.97669  7.24263  7.37080  7.44128  7.23262  7.54954  8.08986  8.65644  8.28909     15 E - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     10   5.20165  7.08831  5.90496  5.44146  7.26795  5.64748  6.06550  6.71473  0.09544  6.03454  6.95572  5.64690  6.24295  5.23872  4.36756  3.33270  5.54767  6.20136  7.84467  6.86209     16 K - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     11   5.27929  8.21183  0.48492  1.23336  7.43053  3.14961  5.92268  7.10844  5.27751  6.49177  7.50478  4.59903  5.91288  5.13001  6.15545  5.04100  5.63192  6.57580  8.62971  6.89240     17 D - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     12   5.26103  8.22927  0.23963  2.26255  7.40682  5.14601  3.22377  7.08206  5.24331  6.46593  7.47581  3.68545  5.89310  5.10101  6.11790  5.01893  5.61003  6.55413  8.61740  6.86382     18 D - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     13   5.23591  8.17310  3.12242  0.20363  7.37604  3.88269  5.88220  7.03796  5.20405  6.42617  7.42130  4.57210  5.88354  2.61367  6.04859  5.00165  5.58172  6.51328  8.57556  6.84123     19 E - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     14   2.59452  6.02323  6.30037  6.10527  1.72193  4.90099  6.71524  5.79134  6.05620  5.50800  6.33361  3.87144  5.73330  6.18281  6.13340  2.36282  0.52703  5.17514  7.74994  6.61688     20 T - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     15   1.51401  6.11373  3.28801  3.75781  5.48360  4.65924  3.13623  4.93584  3.81389  4.52058  5.32267  4.26675  5.11884  4.14807  4.28424  1.03701  2.49917  4.56640  6.73093  2.14411     21 s - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     16   5.11083  7.75657  3.94307  1.64973  7.32189  5.12958  5.93024  6.97917  5.21592  6.39379  7.35923  0.40114  5.87927  5.13700  5.98413  2.57227  5.49488  6.39587  8.52132  6.85226     22 N - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     17   5.97069  7.02550  7.97481  7.42279  4.85320  7.59149  7.81801  1.70149  7.35971  0.25771  4.54809  7.85136  7.22944  6.86747  7.13218  7.16505  6.13919  4.38670  7.31962  6.52901     23 L - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     18   5.39389  8.23124  0.27878  1.64388  7.50086  5.26098  6.03124  7.20969  5.38984  6.58320  7.60884  4.71401  6.00728  5.24483  6.25161  5.15819  5.74655  6.68226  8.63635  6.98785     24 D - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     19   5.23855  8.19119  0.45887  3.21780  7.37942  3.42800  2.63271  7.04400  5.21460  6.43203  7.42938  1.69056  5.88233  5.08477  6.07536  5.00163  5.58445  6.51922  8.58516  6.84249     25 D - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00239  6.43270  7.15504  0.61958  0.77255  0.48576  0.95510
-     20   3.84478  5.18293  5.68628  5.11650  4.30926  4.97779  5.29104  2.02643  3.24881  3.42036  0.80789  5.11944  5.32202  5.05156  4.93798  4.31048  3.17489  3.02349  5.75701  1.84728     26 m - - -
-          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
-          0.00161  6.43192        *  0.61958  0.77255  0.00000        *
-//