Mercurial > repos > jowong > add_sample_as_first_line
diff add_sample_name_as_first_line.xml @ 0:231b21337c43 draft
planemo upload for repository https://github.com/jowong4/add_sample_name_as_first_line_of_file commit 462cf96a681fad46e20321feec5996d1e558a0d3
| author | jowong |
|---|---|
| date | Thu, 27 Sep 2018 17:05:18 -0400 |
| parents | |
| children | 74a9f37e2bc9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/add_sample_name_as_first_line.xml Thu Sep 27 17:05:18 2018 -0400 @@ -0,0 +1,33 @@ +<tool id="my_addName" name="Add sample name as first line" version="0.1.0"> + <description>to an existing tabular file</description> + <command interpreter="python">add_sample_name_as_first_line.py + --input "$input" + --sample "$input2.element_identifier" + --output "$output" + </command> + <inputs> + <param format="tabular" name="input" type="data" label="to Dataset" /> + <param name="input2" format="data" type="data" label="sample" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + + <tests> + <test> + <param name="input" value="test.tab" ftype="tabular" /> + <param name="input2" value="ABC_1.fastq.gz" /> + <output name="output" file="test_with_header.tab" ftype="tabular"/> + </test> + </tests> + <help> +**What it does** + +Adds a new line with the name of the sample file and removing [_12].fastq.gz from the name if there is match to the pattern. +Written by Johnathan Kwan Long Wong, johnathanwong4@gmail.com + </help> + <citations> + <citation type="bibtex">@UNPUBLISHED{Johnathan2018, + author = "Johnathan W"}</citation> + </citations> +</tool>