Mercurial > repos > jowong > add_sample_as_first_line

diff add_sample_name_as_first_line.py @ 3:98f9da980bf5 draft default tip

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planemo upload for repository https://github.com/jowong4/add_sample_name_as_first_line_of_file commit f3fe76f6cbf17b0ec4162065206483652a6519b7-dirty
author jowong
date Fri, 09 Nov 2018 12:27:57 -0500
parents 74a9f37e2bc9
children
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line diff
--- a/add_sample_name_as_first_line.py	Fri Oct 26 17:52:33 2018 -0400
+++ b/add_sample_name_as_first_line.py	Fri Nov 09 12:27:57 2018 -0500
@@ -17,7 +17,7 @@
 #print >> output, args.label
 #print >> output, input
 
-sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.label.rstrip().lstrip())
+sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.sample.rstrip().lstrip())
 
 with open(args.input) as input:
 	with open(args.output, 'w') as output: