Mercurial > repos > jowong > kwip
comparison kwip.xml @ 1:8217df2fd8c5 draft
planemo upload
| author | jowong |
|---|---|
| date | Mon, 26 Nov 2018 02:38:02 -0500 |
| parents | 6c38443b46ac |
| children | 352616f69941 |
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| 0:6c38443b46ac | 1:8217df2fd8c5 |
|---|---|
| 1 <tool id="kwip" name="kwip" version="1.2.9"> | 1 <tool id="kwip" name="kwip" version="1.3.0"> |
| 2 <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description> | 2 <description>Calculates k-mer weighted inner product, a de novo estimator of genetic similarity</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.2.0">kwip</requirement> | 4 <requirement type="package" version="0.2.0">kwip</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 11 -d kwip.dist | 11 -d kwip.dist |
| 12 #for $input in $inputs# $(input.element_identifier).ct.gz #end for# | 12 #for $input in $inputs# $(input.element_identifier).ct.gz #end for# |
| 13 #for $input in $inputs# && rm $(input.element_identifier).ct.gz #end for# | 13 #for $input in $inputs# && rm $(input.element_identifier).ct.gz #end for# |
| 14 ]]></command> | 14 ]]></command> |
| 15 <inputs> | 15 <inputs> |
| 16 <param name="inputs" format="data" type="data_collection" label="inputs" help="Specify dataset with hashed reads"/> | 16 <param name="inputs" format="data" type="data" label="inputs" help="Specify dataset with hashed reads"/> |
| 17 <section name="advanced" title="Advanced options" expanded="false"> | 17 <section name="advanced" title="Advanced options" expanded="false"> |
| 18 <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/> | 18 <param type="boolean" argument="--unweighted" label="Unweighted Inner Product" checked="false" truevalue="--unweighted" falsevalue="" help="Use the unweighted inner proudct kernel. (default: False)"/> |
| 19 <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" /> | 19 <param name="thread" type="integer" value="1" label="Threads" help="Number of simultaneous threads to execute (default: 1)" /> |
| 20 | 20 |
| 21 </section> | 21 </section> |