Mercurial > repos > jowong > prince_galaxy

changeset 9:5b816b501285 draft default tip

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planemo upload
author jowong
date Mon, 26 Nov 2018 02:13:58 -0500
parents 63f3743c2ae4
children
files prince_postprocess.py prince_postprocess.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/prince_postprocess.py	Tue Nov 13 12:19:53 2018 -0500
+++ b/prince_postprocess.py	Mon Nov 26 02:13:58 2018 -0500
@@ -23,7 +23,7 @@
 for path in args.file:
 	with open(path) as f:
 		for line in f:
-			sample_dict[re.sub(".*/","",line)] = sample[path_index]
+			sample_dict[re.sub(".*/","",line.rstrip())] = args.sample[path_index]
 	path_index += 1
 			
 			
--- a/prince_postprocess.xml	Tue Nov 13 12:19:53 2018 -0500
+++ b/prince_postprocess.xml	Mon Nov 26 02:13:58 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="prince_postprocess" name="Prince Postprocess" version="1.0.0">
+<tool id="prince_postprocess" name="Prince Postprocess" version="1.0.1">
     <description>Postprocess PRINCE galaxy output</description>
     <command interpreter="python"><![CDATA[
         prince_postprocess.py -i $prince_output  -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for#