Mercurial > repos > jpetteng > ectyper
comparison ecoli_serotyping/ectyper.xml @ 14:cc089f376052 draft
Uploaded
| author | jpetteng |
|---|---|
| date | Sat, 06 Jan 2018 14:16:29 -0500 |
| parents | d2123e91fb04 |
| children | d107c0bcfefe |
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| 13:082e5ffe8a15 | 14:cc089f376052 |
|---|---|
| 7 <requirement type="package">bcftools</requirement> | 7 <requirement type="package">bcftools</requirement> |
| 8 <requirement type="package">bowtie</requirement> | 8 <requirement type="package">bowtie</requirement> |
| 9 <requirement type="package">spades</requirement> | 9 <requirement type="package">spades</requirement> |
| 10 <requirement type="package">seqtk</requirement> | 10 <requirement type="package">seqtk</requirement> |
| 11 <requirement type="package">pandas</requirement> | 11 <requirement type="package">pandas</requirement> |
| 12 # <requirement type="package">mash</requirement> | 12 <requirement type="package">mash</requirement> |
| 13 <requirement type="package">urllib</requirement> | |
| 13 </requirements> | 14 </requirements> |
| 14 <command detect_errors="exit_code"><![CDATA[ | 15 <command detect_errors="exit_code"><![CDATA[ |
| 15 #if $jobtype.select == "asm" | 16 #if $jobtype.select == "asm" |
| 16 ln -s $jobtype.draft sample.fasta; | 17 ln -s $jobtype.draft sample.fasta; |
| 17 #else if $jobtype.select == "se" | 18 #else if $jobtype.select == "se" |