# HG changeset patch
# User jpetteng
# Date 1515167991 18000
# Node ID e07f3859a2428f989f51f19876a77e2caea384d9
# Parent  19b25805275fa2e8fb848351118199d16c17c228
Updated xml file to require ectyper itself as it should be available via conda.

diff -r 19b25805275f -r e07f3859a242 ecoli_serotyping/ectyper.xml
--- a/ecoli_serotyping/ectyper.xml	Fri Jan 05 10:58:47 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Fri Jan 05 10:59:51 2018 -0500
@@ -1,6 +1,7 @@
 <tool id="ectyper" name="ectyper" version="2.0">
     <requirements>
       <requirement type="package" version="3.6.3">python</requirement>
+      <requirement type="package">ectyper</requirement>
       <requirement type="package">biopython</requirement>
       <requirement type="package">blast</requirement>
       <requirement type="package">samtools</requirement>
@@ -32,7 +33,7 @@
         -i sample_1.fastq sample_2.fastq
       #end if
       -b $maptype.select;
-      cat  SeqSero_result*/Seqsero_result.txt > results.txt; 
+      cat  ectyper_result*/ectyper_result.txt > results.txt; 
 
     ]]></command>
     <inputs>