comparison flexbar.xml @ 23:0ef7736004bb draft

Use of galaxy variable to control number of threads.

22:12e4b3bb38c6

	
	<command interpreter="perl">
		
		flexbar.pl flexbar
		
		--threads $threads
		
		--reads $reads
		
		#if $cReads2.select == "on":
			#if $cReads2.reads2.ext == $reads.ext:

					<option value="" selected="true">Off</option>
					<option value="--random-tags">On</option>
				</param>
			</when>
		</conditional>

		<param name="threads" type="select" label="Threads" help="check availability of cores">
		    <option value="1" selected="true">1</option>
		    <option value="2">2</option>
			<option value="4">4</option>
		</param>
		
  	</inputs>
 	
	<stdio>
	    <exit_code range="1:" level="fatal" description="Error!" />
	</stdio>
	
	<outputs>

23:0ef7736004bb

	
	<command interpreter="perl">
		
		flexbar.pl flexbar
		
		--threads \${GALAXY_SLOTS:-1}
		
		--reads $reads
		
		#if $cReads2.select == "on":
			#if $cReads2.reads2.ext == $reads.ext:

					<option value="" selected="true">Off</option>
					<option value="--random-tags">On</option>
				</param>
			</when>
		</conditional>
		
  	</inputs>
	
	<stdio>
	    <exit_code range="1:" level="fatal" description="Error!" />
	</stdio>
	
	<outputs>