Mercurial > repos > jtilman > flexbar
comparison flexbar.xml @ 39:ae7d2b47ad07 draft
Uploaded
| author | jtilman |
|---|---|
| date | Sun, 01 Jul 2018 07:59:40 -0400 |
| parents | 497da23fee84 |
| children | b0847c1e320b |
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| 38:216a55a39b52 | 39:ae7d2b47ad07 |
|---|---|
| 220 <option value="se">Single read file</option> | 220 <option value="se">Single read file</option> |
| 221 <option value="pe" selected="true">Paired read files</option> | 221 <option value="pe" selected="true">Paired read files</option> |
| 222 <option value="pc">Paired read collection</option> | 222 <option value="pc">Paired read collection</option> |
| 223 </param> | 223 </param> |
| 224 <when value="se"> | 224 <when value="se"> |
| 225 <param name="rs" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz" label="Fastq read file"/> | 225 <param name="rs" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz,fastqsanger.bz2,fastqsolexa.bz2,fastqillumina.bz2" label="Fastq read file"/> |
| 226 </when> | 226 </when> |
| 227 <when value="pe"> | 227 <when value="pe"> |
| 228 <param name="r1" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz" label="Fastq read file 1"/> | 228 <param name="r1" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz,fastqsanger.bz2,fastqsolexa.bz2,fastqillumina.bz2" label="Fastq read file 1"/> |
| 229 <param name="r2" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz" label="Fastq read file 2"/> | 229 <param name="r2" type="data" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz,fastqsanger.bz2,fastqsolexa.bz2,fastqillumina.bz2" label="Fastq read file 2"/> |
| 230 </when> | 230 </when> |
| 231 <when value="pc"> | 231 <when value="pc"> |
| 232 <param name="rc" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz" type="data_collection" collection_type="paired" label="Fastq pair collection"/> | 232 <param name="rc" format="fastqsanger,fastqsolexa,fastqillumina,fastqsanger.gz,fastqsolexa.gz,fastqillumina.gz,fastqsanger.bz2,fastqsolexa.bz2,fastqillumina.bz2" type="data_collection" collection_type="paired" label="Fastq pair collection"/> |
| 233 </when> | 233 </when> |
| 234 </conditional> | 234 </conditional> |
| 235 | 235 |
| 236 <param name="maxUncalled" size="4" type="integer" value="0" label="1) Maximum uncalled bases"/> | 236 <param name="maxUncalled" size="4" type="integer" value="0" label="1) Maximum uncalled bases"/> |
| 237 | 237 |