view toolExample.xml @ 3:079f44f300da draft

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author k3v1n
date Tue, 18 Aug 2020 02:38:40 -0400
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<tool id="fa_gc_content_2020" name="Compute GC content 2020" version="0.1.0">
  <description>for each sequence in a file</description>
  <command>perl 'https://k3v1n@toolshed.g2.bx.psu.edu/repos/k3v1n/gene_test/toolExample.pl' '$input' '$output'</command>
  <inputs>
    <param format="fasta" name="input" type="data" label="Source file"/>
  </inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>
    </test>
  </tests>

  <help>
This tool computes GC content from a FASTA file.
  </help>

</tool>