Mercurial > repos > kaymccoy > fastq_collapser

diff collapser 1.0.0.xml @ 0:da107929c240 draft

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author kaymccoy
date Sun, 07 Aug 2016 10:33:41 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/collapser 1.0.0.xml	Sun Aug 07 10:33:41 2016 -0400
@@ -0,0 +1,16 @@
+<tool id="fastq collapser" name="FASTQ Collapser">
+  <requirements>
+    <requirement type="package" version="0.0.13">fastx_toolkit</requirement>
+  </requirements>
+  <command>
+    fastx_collapser -Q 33 -i $input -o $output
+  </command>
+  <inputs>
+    <param name="input" type="data" label="Reads to collapse" />
+   </inputs>
+  <outputs>
+    <data format="fasta" name="output" />
+  </outputs>
+  <help>  
+</help>
+</tool>
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