Mercurial > repos > kellrott > cluster3
comparison cluster3.xml @ 1:e1bc1519822b draft default tip
Fixing file format types
| author | kellrott |
|---|---|
| date | Wed, 07 Nov 2012 18:34:15 -0500 |
| parents | cdcb3276c0e1 |
| children |
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| 0:cdcb3276c0e1 | 1:e1bc1519822b |
|---|---|
| 1 <tool id="cluster3" name="Cluster 3" version="1.0.0"> | 1 <tool id="cluster3" name="Cluster 3" version="1.0.1"> |
| 2 <description>Cluster 3.0</description> | 2 <description>Cluster 3.0</description> |
| 3 <command interpreter="python">$scriptfile</command> | 3 <command interpreter="python">$scriptfile</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="filename" type="data" format="tab" label="Matrix"/> | 5 <param name="filename" type="data" format="tabular" label="Matrix"/> |
| 6 <param name="row_center" type="select" label="Row Center (gene)"> | 6 <param name="row_center" type="select" label="Row Center (gene)"> |
| 7 <option value="x">No row Center</option> | 7 <option value="x">No row Center</option> |
| 8 <option value="a">Substact mean of row</option> | 8 <option value="a">Substact mean of row</option> |
| 9 <option value="m">Substact median of row</option> | 9 <option value="m">Substact median of row</option> |
| 10 </param> | 10 </param> |
| 75 </when> | 75 </when> |
| 76 </conditional> | 76 </conditional> |
| 77 | 77 |
| 78 </inputs> | 78 </inputs> |
| 79 <outputs> | 79 <outputs> |
| 80 <data name="cdtfile" format="cdt" label="CDT File"> | 80 <data format="txt" name="cdtfile" label="CDT File"> |
| 81 <filter>cparam['run_mode'] == "clustering"</filter> | 81 <filter>cparam['run_mode'] == "clustering"</filter> |
| 82 </data> | 82 </data> |
| 83 <data format="atr" name="atrfile" label="ATR File"> | 83 <data format="txt" name="atrfile" label="ATR File"> |
| 84 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['col_distance'] != "0"</filter> | 84 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['col_distance'] != "0"</filter> |
| 85 </data> | 85 </data> |
| 86 <data format="gtr" name="gtrfile" label="GTR File"> | 86 <data format="txt" name="gtrfile" label="GTR File"> |
| 87 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['row_distance'] != "0"</filter> | 87 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "hierarchical" and cparam['row_distance'] != "0"</filter> |
| 88 </data> | 88 </data> |
| 89 <data format="txt" name="kagfile" label="KAG File"> | 89 <data format="txt" name="kagfile" label="KAG File"> |
| 90 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "kmeans" and cparam['col_distance'] != "0"</filter> | 90 <filter>cparam['run_mode'] == "clustering" and cparam['cluster_mode']['mode_name'] == "kmeans" and cparam['col_distance'] != "0"</filter> |
| 91 </data> | 91 </data> |