Mercurial > repos > kellrott > nosql_interface
view couchdb_client.xml @ 0:907b95ba9cf7 draft
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author | kellrott |
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date | Tue, 24 Jul 2012 17:40:26 -0400 |
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<tool id="couchdb_client" name="CouchDB Client" version="1.0.0"> <description>CouchDB Client</description> <command interpreter="python">$scriptfile</command> <inputs> <param name="url" type="text" size="128" label="Server URL"/> <param name="db" type="text" size="32" label="Database"/> <param name="query" type="text" area="True" size="5x25" label="Query"> <sanitizer> <valid initial="string.printable"/> <mapping initial="none"> <add source=" " target="__cn__"/> <add source=""" target="__dq__"/> </mapping> </sanitizer> </param> </inputs> <outputs> <data name="output" format="txt"/> </outputs> <configfiles> <configfile name="scriptfile"><![CDATA[#!/usr/bin/env python import couchdb.client import json import galaxy.eggs import galaxy.util server = couchdb.client.Server(galaxy.util.restore_text("$url")) db = server['$db'] query=galaxy.util.restore_text("""$query""") print query result = db.query(query) print result handle = open(galaxy.util.restore_text("$output"), "w") for row in result: handle.write("{\"key\":%s, \"value\":%s}\n" % (json.dumps(row.key), json.dumps(row.value))) handle.close() ]]></configfile> </configfiles> <help> </help> </tool>