changeset 3:4d03df88688d draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bulk_download.xml	Tue Jul 24 17:42:17 2012 -0400
@@ -0,0 +1,59 @@
+<tool id="bulk_download" name="Bulk Download" version="1.0">
+	<description>Bulk Downloader</description>
+	<command interpreter="python">$script_file $output $output.id $__new_file_path__</command>
+	<inputs>
+		<param name="urls_txt" type="text" area="True" size="5x35" label="URL Text" optional="True"/>
+		<param name="urls_file" type="data" label="URL File" optional="True"/>
+		<param name="decompress" type="boolean" label="Decompress" value="true"/>
+		
+	</inputs>
+	<outputs>
+		<data name="output"/>
+	</outputs>
+	<configfiles>
+        	<configfile name="script_file"><![CDATA[#!/usr/bin/env python
+import os
+import sys
+import urllib
+import tempfile
+
+urls_txt  = """${urls_txt}"""
+urls_file = """${urls_file}"""
+decompress = "${decompress}"
+
+output = sys.argv[1]
+output_id = sys.argv[2]
+output_dir = sys.argv[3]
+
+
+if len(urls_file) and urls_file != "None":
+    handle = open(urls_file)
+else:
+    handle = StringIO(urls_txt)
+
+#fix for multiple outputs
+opath = output
+for line in handle:
+    url = line.rstrip()
+    base = os.path.basename(url)
+    h, path = tempfile.mkstemp(dir="./")
+    os.close(h)
+    urllib.urlretrieve(url, path)
+    if decompress == "true":
+        if base.endswith(".gz"):
+            import gzip
+            ohandle = open(opath, "wb")
+            f = gzip.GzipFile(path, "rb")
+            for chunk in iter(lambda: f.read(8192), ''): 
+                ohandle.write(chunk)
+            ohandle.close()
+            f.close()
+        
+        if os.path.exists(path):
+            os.unlink(path)
+    else:
+        shutil.move(path, opath)
+
+]]></configfile>
+	</configfiles>
+</tool>