Mercurial > repos > kevyin > homer

diff tool_dependencies.xml @ 16:687df269e597 draft

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author kevyin
date Wed, 19 Dec 2012 17:28:55 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Dec 19 17:28:55 2012 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="homer" version="4.1">
+    <install version="4.1">
+      <actions>
+        <action type="download_by_url">http://biowhat.ucsd.edu/homer/configureHomer.pl</action>
+        <action type="shell_command">perl ./configureHomer.pl -install</action>
+        <action type="shell_command">perl ./configureHomer.pl -install hg19</action>
+        <action type="move_directory_files">
+          <source_directory>./</source_directory>
+          <destination_directory>$INSTALL_DIR</destination_directory>
+        </action>
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+    <readme>
+      Installs homer
+    </readme>
+  </package>
+</tool_dependency>
+