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1 Meme-chip wrapper for Galaxy
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2
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3 ========Installation instructions========:
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4 First make sure meme is installed and accessible from the command line.
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5 Meme-chip assumes the meme tools are in PATH.
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6
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7 ========Tool data table conf========
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8 Check the entry is in tool_data_table_conf.xml
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9
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10 ========Tool loc file========
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11
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12 Example in tool-data/meme_chip_motifs.loc.sample
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13 Entries come from the motif_db.csv in the motif database folder
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14
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15 make sure:
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16 - 3 cols
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17 - tab delimited
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18 - paths are correct
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19
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20 There is a script to convert the csv to the loc format here:
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21 https://bitbucket.org/gvl/meme-chip/src
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22 After running delete the loc entries with multiple paths eg. All Vertebrates
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23
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24
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25 LICENSE for this wrapper:
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26 Kevin Ying
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27 Garvan Institute http://www.garvan.org.au
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28 GVL https://genome.edu.au/wiki/GVL
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29
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30 http://opensource.org/licenses/mit-license.php
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