Mercurial > repos > kevyin > meme_chip

diff README @ 2:19ca87a1ccee draft
Uploaded
author: kevyin
date: Tue, 06 Nov 2012 22:53:15 -0500
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+Meme-chip wrapper for Galaxy
+
+========Installation instructions========:
+First make sure meme is installed and accessible from the command line.
+Meme-chip assumes the meme tools are in PATH.
+
+========Tool data table conf========
+Add the entry from the sample to tool_data_table_conf.xml
+
+========Tool loc file========
+
+Example in tool-data/meme_chip_motifs.loc.sample
+Entries come from the motif_db.csv in the motif database folder
+
+make sure:
+- 3 cols
+- tab delimited
+- paths are correct
+
+There is a script to convert the csv to the loc format here:
+https://bitbucket.org/gvl/meme-chip/src
+After running delete the loc entries with multiple paths eg. All Vertebrates
+
+
+LICENSE for this wrapper: 
+Kevin Ying
+Garvan Institute http://www.garvan.org.au
+GVL https://genome.edu.au/wiki/GVL
+
+http://opensource.org/licenses/mit-license.php