diff tool-data/meme_chip_motifs.loc.sample @ 11:dd79316654f6 draft

Uploaded
author kevyin
date Wed, 07 Nov 2012 23:55:31 -0500
parents 19ca87a1ccee
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/meme_chip_motifs.loc.sample	Wed Nov 07 23:55:31 2012 -0500
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+# value name path
+JASPAR CORE	JASPAR CORE	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009.meme
+JASPAR CORE vertebrates	JASPAR CORE vertebrates	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_vertebrates.meme
+JASPAR CORE fungi	JASPAR CORE fungi	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_fungi.meme
+JASPAR CORE insects	JASPAR CORE insects	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_insects.meme
+JASPAR CORE nematodes	JASPAR CORE nematodes	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_nematodes.meme
+JASPAR CORE plants	JASPAR CORE plants	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_plants.meme
+JASPAR CORE urochordates	JASPAR CORE urochordates	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CORE_2009_urochordates.meme
+JASPAR PHYLOFACTS	JASPAR PHYLOFACTS	/home/kevyin/bin/meme/db/motif_databases/JASPAR_PHYLOFACTS_2008.meme
+JASPAR FAM	JASPAR FAM	/home/kevyin/bin/meme/db/motif_databases/JASPAR_FAM_2008.meme
+JASPAR POLII	JASPAR POLII	/home/kevyin/bin/meme/db/motif_databases/JASPAR_POLII_2008.meme
+JASPAR CNE	JASPAR CNE	/home/kevyin/bin/meme/db/motif_databases/JASPAR_CNE_2008.meme
+JASPAR SPLICE	JASPAR SPLICE	/home/kevyin/bin/meme/db/motif_databases/JASPAR_SPLICE_2008.meme
+UniPROBE/BEEML-PBM (Zhao and Stormo 2011)	UniPROBE/BEEML-PBM (Zhao and Stormo 2011)	/home/kevyin/bin/meme/db/motif_databases/zhao2011.meme
+Human and Mouse (Jolma2010)	Human and Mouse (Jolma2010)	/home/kevyin/bin/meme/db/motif_databases/jolma2010.meme
+Human and Mouse (MacIsaac THEME)	Human and Mouse (MacIsaac THEME)	/home/kevyin/bin/meme/db/motif_databases/macisaac_theme.v1.meme
+Prokaryotes (Prodoric Release 8.9)	Prokaryotes (Prodoric Release 8.9)	/home/kevyin/bin/meme/db/motif_databases/prodoric.meme
+Prokaryotes (RegTransBase v4)	Prokaryotes (RegTransBase v4)	/home/kevyin/bin/meme/db/motif_databases/regtransbase.meme
+Drosophila (FLYREG; Bergman & Pollard v2)	Drosophila (FLYREG; Bergman & Pollard v2)	/home/kevyin/bin/meme/db/motif_databases/flyreg.v2.meme
+Drosophila (DMMPMM; Kulakovskiy et al. 2009)	Drosophila (DMMPMM; Kulakovskiy et al. 2009)	/home/kevyin/bin/meme/db/motif_databases/dmmpmm2009.meme
+Drosophila (iDMMPMM; Kulakovskiy et al. 2009)	Drosophila (iDMMPMM; Kulakovskiy et al. 2009)	/home/kevyin/bin/meme/db/motif_databases/idmmpmm2009.meme
+Homeodomains (Berger et al.)	Homeodomains (Berger et al.)	/home/kevyin/bin/meme/db/motif_databases/homeodomain.meme
+Mouse (UniPROBE)	Mouse (UniPROBE)	/home/kevyin/bin/meme/db/motif_databases/uniprobe_mouse.meme
+Mouse (Chen2008)	Mouse (Chen2008)	/home/kevyin/bin/meme/db/motif_databases/chen2008.meme
+ETS factors (Wei et al. 2010)	ETS factors (Wei et al. 2010)	/home/kevyin/bin/meme/db/motif_databases/wei2010*.meme
+E. coli (DPINTERACT)	E. coli (DPINTERACT)	/home/kevyin/bin/meme/db/motif_databases/dpinteract.meme
+GLIs and TCF7L2/TCF4 (Hallikas et al. 2006)	GLIs and TCF7L2/TCF4 (Hallikas et al. 2006)	/home/kevyin/bin/meme/db/motif_databases/hallikas2006.meme
+Worm (UniPROBE)	Worm (UniPROBE)	/home/kevyin/bin/meme/db/motif_databases/uniprobe_worm.meme
+Malaria (Campbell et al. 2010)	Malaria (Campbell et al. 2010)	/home/kevyin/bin/meme/db/motif_databases/campbell2010_malaria_pbm.meme
+Yeast (MacIsaac v1)	Yeast (MacIsaac v1)	/home/kevyin/bin/meme/db/motif_databases/macisaac_yeast.v1.meme
+Yeast (SCPD)	Yeast (SCPD)	/home/kevyin/bin/meme/db/motif_databases/scpd_matrix.meme