Mercurial > repos > kevyin > meme_chip

Meme-chip wrapper for Galaxy

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========Installation instructions========:
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The tool_dependencies.xml can attempt to install meme in a folder specific for this tool.
(such as bwa_wrappers)

The procedure does NOT download motif databases you will need to download them yourself

Meme-chip assumes the meme tools are in PATH.
Make sure meme is accessible


========Tool data table conf========
Check the meme_chip_motifs entry is in tool_data_table_conf.xml

========Tool loc file========

Example in tool-data/meme_chip_motifs.loc.sample
Entries come from the motif_db.csv in the motif database folder

make sure:
- 3 cols
- tab delimited
- paths are correct

There is a script to convert the csv to the loc format here:
https://bitbucket.org/gvl/meme-chip/src
After running delete the loc entries with multiple paths eg. All Vertebrates


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LICENSE for this wrapper:
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Kevin Ying
Garvan Institute: http://www.garvan.org.au
GVL: https://genome.edu.au/wiki/GVL

http://opensource.org/licenses/mit-license.php
author	kevyin
date	Thu, 22 Nov 2012 20:27:29 -0500
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