Mercurial > repos > kevyin > meme_chip

Meme-chip wrapper for Galaxy

========Installation instructions========:
First make sure meme is installed and accessible from the command line.
Meme-chip assumes the meme tools are in PATH.

========Tool data table conf========
Check the entry is in tool_data_table_conf.xml

========Tool loc file========

Example in tool-data/meme_chip_motifs.loc.sample
Entries come from the motif_db.csv in the motif database folder

make sure:
- 3 cols
- tab delimited
- paths are correct

There is a script to convert the csv to the loc format here:
https://bitbucket.org/gvl/meme-chip/src
After running delete the loc entries with multiple paths eg. All Vertebrates


LICENSE for this wrapper:
Kevin Ying
Garvan Institute http://www.garvan.org.au
GVL https://genome.edu.au/wiki/GVL

http://opensource.org/licenses/mit-license.php
author	kevyin
date	Mon, 12 Nov 2012 01:17:03 -0500
parents	1e428d8defbc
children	c3e0e0a0ae09