# HG changeset patch
# User koen
# Date 1452700262 18000
# Node ID 42e50f8fa52ee409e7d567b6eb660e53d82b1dc1
# Parent  9819913262ecf90ad3d448a6f28f992fb1e4e26f
Uploaded

diff -r 9819913262ec -r 42e50f8fa52e gbsx_barcodeGenerator.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gbsx_barcodeGenerator.sh	Wed Jan 13 10:51:02 2016 -0500
@@ -0,0 +1,14 @@
+#!/usr/bin/env bash
+
+#export PATH=$PATH:$(dirname $0)
+#BASEDIR=$(dirname $0)
+
+barcode=$1
+enzyme=$2
+barcode_list=$3
+barcode_summary=$4
+
+java -jar $GBSX_PATH/GBSX.jar --BarcodeGenerator -b $barcode -e $enzyme
+
+awk '{print "sample" NR "\t" $1 "\t" var;}' var="$enzyme" barcode_list.txt > $barcode_list
+cat barcode_summary.txt > $barcode_summary