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comparison minfi_dmr.xml @ 71:1334312dc198 draft

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author kpbioteam
date Fri, 10 May 2019 06:42:23 -0400
parents 2ee6ac5227f1
children 9c6fbb7d5a2a
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70:297a0cda5c7b 71:1334312dc198
54 write.table(dmrGR, file= '$dmr', quote = FALSE,col.names = TRUE, row.names = FALSE, sep = "\t") 54 write.table(dmrGR, file= '$dmr', quote = FALSE,col.names = TRUE, row.names = FALSE, sep = "\t")
55 ]]> 55 ]]>
56 </configfile> 56 </configfile>
57 </configfiles> 57 </configfiles>
58 <inputs> 58 <inputs>
59 <param type="data" name="grset" format="rdata" label="Genomic Ratio Set" help="This class holds preprocessed data for Illumina methylation microarrays, mapped to a genomic 59 <param type="data" name="grset" format="rdata" label="Data Mapped To The Genome" help="This class (GenomicRatioSet) holds preprocessed data for Illumina methylation microarrays, mapped to a genomic
60 location." /> 60 location." />
61 <param type="data" name="phenotype_table" format="tabular" label="Phenotype Table" 61 <param type="data" name="phenotype_table" format="tabular" label="Phenotype Table"
62 help="Phenotype Table must include the following information: sampleID, phenotype and paird or unpaired samples column"/> 62 help="Phenotype Table must include the following information: sampleID, phenotype and paird or unpaired samples column"/>
63 <param name="maxgap_size" type="integer" value="250" label="maxGap Size" 63 <param name="maxgap_size" type="integer" value="250" label="maxGap Size"
64 help="If cluster is not provided this maximum location gap will be used to define cluster"/> 64 help="If cluster is not provided this maximum location gap will be used to define cluster"/>