|
0
|
1 application: gfindoriter [
|
|
|
2 documentation: "Predicts the replication origin and terminus in bacterial genomes"
|
|
|
3 groups: "Nucleic:Composition"
|
|
|
4 embassy: "gembassy"
|
|
|
5 relations: "EDAM_topic:3073 Nucleic acid feature detection"
|
|
|
6 relations: "EDAM_operation:0415 Nucleic acid feature prediction"
|
|
|
7 ]
|
|
|
8
|
|
|
9 section: input [
|
|
|
10 information: "Input section"
|
|
|
11 type: "page"
|
|
|
12 ]
|
|
|
13
|
|
|
14 seqall: sequence [
|
|
|
15 parameter: "Y"
|
|
|
16 type: "nucleotide"
|
|
|
17 features: "Y"
|
|
|
18 relations: "EDAM_data:0849 Sequence record"
|
|
|
19 ]
|
|
|
20
|
|
|
21 endsection: input
|
|
|
22
|
|
|
23 section: advanced [
|
|
|
24 information: "Advanced section"
|
|
|
25 type: "page"
|
|
|
26 ]
|
|
|
27
|
|
|
28 integer: window [
|
|
|
29 information: "Number of windows to use for Fat Fourier Transform. Only active when -lowpass option is specified. Value must be the power of two"
|
|
|
30 default: "4096"
|
|
|
31 ]
|
|
|
32
|
|
|
33 boolean: purine [
|
|
|
34 information: "Use purine skew for calculation"
|
|
|
35 default: "N"
|
|
|
36 ]
|
|
|
37
|
|
|
38 boolean: keto [
|
|
|
39 information: "Use keto skew for calculation"
|
|
|
40 default: "N"
|
|
|
41 ]
|
|
|
42
|
|
|
43 integer: lowpass [
|
|
|
44 information: "Lowpass filter strength in percent. Typically 95 or 99 works best"
|
|
|
45 default: ""
|
|
|
46 ]
|
|
|
47
|
|
|
48 endsection: advanced
|
|
|
49
|
|
|
50 section: output [
|
|
|
51 information: "Output section"
|
|
|
52 type: "page"
|
|
|
53 ]
|
|
|
54
|
|
|
55 outfile: outfile [
|
|
|
56 parameter: "Y"
|
|
|
57 relations: "EDAM_data:3127 Nucleic acid features (replication and
|
|
|
58 recombination)"
|
|
|
59 ]
|
|
|
60
|
|
|
61 endsection: output
|
