annotate GEMBASSY-1.0.3/acd/gaaui.acd @ 1:84a17b3fad1f draft

Uploaded
author ktnyt
date Fri, 26 Jun 2015 05:20:29 -0400
parents 8300eb051bea
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
1 application: gaaui [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
2 documentation: "Calculates various indece of amino acid usage"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
3 groups: "Protein:Properties"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
4 embassy: "gembassy"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
5 relations: "EDAM_topic:0613 Peptides and amino acids"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
6 relations: "EDAM_operation:0250 Protein property calculation"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
7 relations: "EDAM_operation:0398 Protein molecular weight calculation"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
8 relations: "EDAM_operation:2574 Protein hydropathy calculation"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
9 relations: "EDAM_operation:0401 Protein hydropathy calculation
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
10 (from sequence)"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
11 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
12
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
13 section: input [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
14 information: "Input section"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
15 type: "page"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
16 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
17
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
18 seqall: sequence [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
19 parameter: "Y"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
20 features: "Y"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
21 type: "nucleotide"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
22 relations: "EDAM_data:0849 Sequence record"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
23 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
24
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
25 endsection: input
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
26
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
27 section: advanced [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
28 information: "Advanced section"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
29 type: "page"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
30 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
31
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
32 boolean: accid [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
33 information: "Include to use sequence accession ID as query"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
34 default: "N"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
35 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
36
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
37 endsection: advanced
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
38
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
39 section: output [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
40 information: "Output section"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
41 type: "page"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
42 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
43
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
44 outfile: outfile [
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
45 parameter: "Y"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
46 information: "AAINDEX entry output file"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
47 knowntype: "aaindex data"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
48 relations: "EDAM_data:2016 Amino acid property"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
49 relations: "EDAM_data:1501 Amino acid index"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
50 relations: "EDAM_data:1502 Amino acid index (chemical classes)"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
51 relations: "EDAM_data:1506 Amino acid index (hydropathy)"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
52 relations: "EDAM_data:1505 Amino acid index (molecular weight)"
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
53 ]
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
54
8300eb051bea Initial upload
ktnyt
parents:
diff changeset
55 endsection: output