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1 application: gaaui [
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2 documentation: "Calculates various indece of amino acid usage"
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3 groups: "Protein:Properties"
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4 embassy: "gembassy"
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5 relations: "EDAM_topic:0613 Peptides and amino acids"
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6 relations: "EDAM_operation:0250 Protein property calculation"
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7 relations: "EDAM_operation:0398 Protein molecular weight calculation"
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8 relations: "EDAM_operation:2574 Protein hydropathy calculation"
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9 relations: "EDAM_operation:0401 Protein hydropathy calculation
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10 (from sequence)"
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11 ]
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12
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13 section: input [
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14 information: "Input section"
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15 type: "page"
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16 ]
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17
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18 seqall: sequence [
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19 parameter: "Y"
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20 features: "Y"
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21 type: "nucleotide"
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22 relations: "EDAM_data:0849 Sequence record"
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23 ]
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24
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25 endsection: input
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26
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27 section: advanced [
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28 information: "Advanced section"
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29 type: "page"
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30 ]
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31
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32 boolean: accid [
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33 information: "Include to use sequence accession ID as query"
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34 default: "N"
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35 ]
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36
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37 endsection: advanced
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38
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39 section: output [
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40 information: "Output section"
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41 type: "page"
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42 ]
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43
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44 outfile: outfile [
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45 parameter: "Y"
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46 information: "AAINDEX entry output file"
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47 knowntype: "aaindex data"
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48 relations: "EDAM_data:2016 Amino acid property"
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49 relations: "EDAM_data:1501 Amino acid index"
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50 relations: "EDAM_data:1502 Amino acid index (chemical classes)"
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51 relations: "EDAM_data:1506 Amino acid index (hydropathy)"
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52 relations: "EDAM_data:1505 Amino acid index (molecular weight)"
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53 ]
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54
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55 endsection: output
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